Merge branch 'release/V1.2.0'

README.md

@@ -16,7 +16,7 @@ The core model is designed to represent data about a rare disease patient and bi
 The figure below gives an overview of upper level concepts and properties used in our metadata model.
 
 <p align="center"> 
-	<img src="images/resourceSemanticMetadataModel.png"> 
+	<img src="docs/ResourceMetadataSchema.png"> 
 </p> 
 
 You can browse different metadata modules by visiting the links below.
@@ -28,6 +28,7 @@ You can browse different metadata modules by visiting the links below.
 	* [Patient Registry](docs/patient-registry.md) - describes a patient registry
 	* [Biobank](docs/biobank.md) - describes a biobank
 	* [Guideline](docs/guideline.md) - describes a guideline
+	* [Dataset](docs/dataset.md) - describes a dataset
 
 ### Ontologies used in the metadata model
 
@@ -39,7 +40,7 @@ To describe different metadata modules listed above we used various exiting onto
 
 Concepts to describe resources that we use in the Rare diseases domain such as biobank and patient registry are <b>not</b> defined in resource description vocabulary as a DCAT. To overcome this issue we have extended DCAT with by added missing concepts to DCAT vocabulary.
 
-* [Data Catalog Vocabulary extension](docs/dcat-extension.md)
+* [Data Catalog Vocabulary extension](https://github.com/ejp-rd-vp/resource-metadata-schema-ontology)
 
 
 

data/example-rdf/turtle/dataservices.ttl

@@ -0,0 +1,21 @@
+@prefix : <http://purl.org/ejp-rd/metadata-model/v1/example-rdf/> .
+@prefix dcat:  <http://www.w3.org/ns/dcat#> .
+@prefix dct:   <http://purl.org/dc/terms/> .
+@prefix foaf:  <http://xmlns.com/foaf/0.1/> .
+
+:cellosaurusDataService a dcat:DataService ;
+   dct:publisher :publisher ;
+   dct:title "Cellosaurus API" ;
+   dct:description "An API for searching Cellosaurus cell lines" ;
+   dct:license <https://creativecommons.org/licenses/by/4.0> ;
+   dcat:endpointURL <https://web.expasy.org/cgi-bin/cellosaurus/search> ;
+   dcat:servesDataset <https://web.expasy.org/cellosaurus/> .
+
+:publisher a foaf:Agent ;
+  dct:title "Cellosaurus - a knowledge resource on cell lines" ;
+  foaf:page <https://web.expasy.org/cellosaurus/> ;
+  dct:spatial  :location .
+
+:location a dct:Location ;
+  dct:title  "Online Resource" .
+

data/example-rdf/turtle/dataset.ttl

@@ -0,0 +1,50 @@
+@prefix : <http://purl.org/ejp-rd/metadata-model/v1/example-rdf/> .
+@prefix dcat:  <http://www.w3.org/ns/dcat#> .
+@prefix dct:   <http://purl.org/dc/terms/> .
+@prefix foaf:  <http://xmlns.com/foaf/0.1/> .
+
+:cellosaurusDataset a dcat:Dataset ;
+  dct:publisher :publisher ;
+  dct:title "Cellosaurus" ;
+  dct:description "A knowledge resource on cell lines" ;
+  dcat:theme  <http://purl.obolibrary.org/obo/CLO_0000031>, <http://purl.obolibrary.org/obo/NCIT_C16403> ;
+  dcat:keyword "cell lines" ;
+  dct:license <https://creativecommons.org/licenses/by/4.0> ;
+  dct:hasVersion "39" ;
+  dcat:distribution :cellosaurusRefsDistribution, :cellosaurusXMLDistribution,  :cellosaurusTextDistribution;
+  dcat:landingPage <https://web.expasy.org/cellosaurus/> .
+
+:cellosaurusRefsDistribution a dcat:Distribution ;
+  dct:title "References file for the Cellosaurus" ;
+  dct:description "References file for the Cellosaurus" ;
+  dcat:downloadURL <https://ftp.expasy.org/databases/cellosaurus/cellosaurus_refs.txt> ;
+  dct:license <https://creativecommons.org/licenses/by/4.0> ;
+  dct:hasVersion "39" ;
+  dcat:mediaType "text/plain" ;
+  dct:publisher :publisher .
+
+:cellosaurusXMLDistribution a dcat:Distribution ;
+  dct:title "Cellosaurus data as XML" ;
+  dct:description "Cellosaurus data as XML" ;
+  dcat:downloadURL <https://ftp.expasy.org/databases/cellosaurus/cellosaurus.xml> ;
+  dct:license <https://creativecommons.org/licenses/by/4.0> ;
+  dct:hasVersion "39" ;
+  dcat:mediaType "text/xml" ;
+  dct:publisher :publisher .
+
+:cellosaurusTextDistribution a dcat:Distribution ;
+  dct:title "Cellosaurus data as plain text" ;
+  dct:description "Cellosaurus data as plain text" ;
+  dcat:downloadURL <https://ftp.expasy.org/databases/cellosaurus/cellosaurus.txt> ;
+  dct:license <https://creativecommons.org/licenses/by/4.0> ;
+  dct:hasVersion "39" ;
+  dcat:mediaType "text/plain" ;
+  dct:publisher :publisher .
+
+:publisher a foaf:Agent ;
+  dct:title "Cellosaurus - a knowledge resource on cell lines" ;
+  foaf:page <https://web.expasy.org/cellosaurus/> ;
+  dct:spatial  :location .
+
+:location a dct:Location ;
+  dct:title  "Online Resource" .

data/example-rdf/turtle/distribution.ttl

@@ -0,0 +1,21 @@
+@prefix : <http://purl.org/ejp-rd/metadata-model/v1/example-rdf/> .
+@prefix dcat:  <http://www.w3.org/ns/dcat#> .
+@prefix dct:   <http://purl.org/dc/terms/> .
+@prefix foaf:  <http://xmlns.com/foaf/0.1/> .
+
+:distribution a dcat:Distribution ;
+  dct:publisher :publisher ;        
+  dct:title "Distribution 1" ;
+  dct:description "An examplar csv distribution" ;
+  dct:license <https://creativecommons.org/licenses/by/4.0> ;
+  dct:hasVersion "1.0" ;
+  dcat:downloadURL <https://ftp.example.com/test.csv>;
+  dcat:mediaType "text/csv";
+  dct:isPartOf :dataset .
+
+:publisher a foaf:Agent ;
+  dct:title "Some organisation or a person" ;
+  dct:spatial  :location .
+
+:location a dct:Location ;
+  dct:title  "Germany" .

docs/biobank.md

@@ -49,8 +49,8 @@
 ##### ShEx figure
 
 <p align="center"> 
-    <a href="../images/shex/biobank.png" target="_blank">
-        <img src="../images/shex/biobank.png"> 
+    <a href="../images/shex/biobank.svg" target="_blank">
+        <img src="../images/shex/biobank.svg"> 
     </a>
 </p>
 

docs/catalog.md

@@ -38,8 +38,8 @@
 ##### ShEx figure
 
 <p align="center"> 
-    <a href="../images/shex/catalog.png" target="_blank">
-        <img src="../images/shex/catalog.png"> 
+    <a href="../images/shex/catalog.svg" target="_blank">
+        <img src="../images/shex/catalog.svg"> 
     </a>
 </p>