You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Added makeSpeciesTree option. This makes gene trees for the hard core set of gene families (using FastTree with GTR+CAT) and then combines them into a species tree using ASTRAL. There is also makeGeneFamilyTrees to make gene trees for the families.
Several changes to internal objects and processes to facilitate running larger numbers of strains.
parseGenbank can now optionally create DNA files (depending on the new parameter dnaBasedGeneTrees).