{bio}[system/system] bcl-convert v4.2.7-2 w/ el7.x86_64 #20513

verdurin · 2024-05-10T16:48:41Z

(created using eb --new-pr)

smoors · 2024-05-13T12:27:31Z

@boegelbot: please test @ generoso

boegelbot · 2024-05-13T12:30:17Z

@smoors: Request for testing this PR well received on login1

PR test command 'EB_PR=20513 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_20513 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 13450

Test results coming soon (I hope)...

- notification for comment with ID 2107444108 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2024-05-13T12:30:42Z

Test report by @boegelbot
FAILED
Build succeeded for 0 out of 1 (1 easyconfigs in total)
cns1 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/4fb96568766874aed719dd0d342c3816 for a full test report.

smoors · 2024-05-13T12:35:33Z

== 2024-05-13 12:30:40,388 build_log.py:171 ERROR EasyBuild crashed with an error (at easybuild/easybuild-framework/easybuild/base/exceptions.py:126 in init): Command 'rpmrebuild' is required but not available. Please add it as a dependency or install it with the OS package manager. (at easybuild/easybuild-easyblocks/easybuild/easyblocks/generic/rpm.py:60 in rebuild_rpm)

can you add rpmrebuild as a builddep?

verdurin · 2024-06-05T16:16:27Z

Test report by @verdurin
SUCCESS
Build succeeded for 2 out of 2 (1 easyconfigs in total)
easybuild-c7.novalocal - Linux CentOS Linux 7.9.2009, x86_64, Intel Xeon Processor (Skylake, IBRS), Python 3.6.8
See https://gist.github.com/verdurin/b5070073bb3711bff88674dfcd3cbfb9 for a full test report.

verdurin · 2024-06-05T16:17:39Z

@boegelbot please test @ generoso

boegelbot · 2024-06-05T16:20:05Z

@verdurin: Request for testing this PR well received on login1

PR test command 'EB_PR=20513 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_20513 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 13648

Test results coming soon (I hope)...

- notification for comment with ID 2150463336 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2024-06-05T16:20:51Z

Test report by @boegelbot
FAILED
Build succeeded for 1 out of 2 (1 easyconfigs in total)
cns1 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/b013a5f119bad26bbca7b441af25ce49 for a full test report.

verdurin · 2024-06-05T16:23:07Z

@smoors I added that, and now this weird error is showing:
rpm: -bb: unknown option ?

verdurin · 2024-06-05T16:29:26Z

I don't have any local systems where RPM isn't available in the OS...

verdurin · 2024-06-05T17:07:08Z

I've raised an issue against the RPM easyblock at easybuilders/easybuild-easyblocks#3350

smoors · 2024-06-05T19:36:47Z

the issue is that rpmbuild is not available in generoso. in that case the rpmrebuild.sh script assumes that the rpm version is 3 (see code snippet below), which is not the case. the -bb option is no longer available in, rpm it is now in rpmbuild.

function RpmBuild
{
    Debug '(RpmBuild)'
    # rpmrebuild package dependency
    # for rpm 3.x : use rpm
    # for rpm 4.x : use rpmbuild
    local BUILDCMD
    if [ -x /usr/bin/rpmbuild ]
    then
        BUILDCMD=/usr/bin/rpmbuild
    else

        BUILDCMD=rpm
    fi

i'm not sure what's the best way to get rpmbuild installed in generoso?

verdurin · 2024-06-10T11:57:32Z

@smoors thanks for diagnosing. I asked about it in the 'test-bots' channel.

Could you submit a test build from one of your local systems in the meantime?

smoors · 2024-06-10T12:19:26Z

Test report by @smoors
SUCCESS
Build succeeded for 2 out of 2 (1 easyconfigs in total)
node306.hydra.os - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz (skylake_avx512), Python 3.6.8
See https://gist.github.com/smoors/c90ff91b3c3d4a559f0aaa55838cb9d2 for a full test report.

smoors · 2024-06-10T12:31:43Z

@boegelbot please test @ jsc-zen3

boegelbot · 2024-06-10T12:40:08Z

@smoors: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=20513 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_20513 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 4346

Test results coming soon (I hope)...

- notification for comment with ID 2158221419 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2024-06-10T12:40:35Z

Test report by @boegelbot
FAILED
Build succeeded for 1 out of 2 (1 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.4, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.18
See https://gist.github.com/boegelbot/ebbb6b548bbb97a6b2b6e6f7eaf69025 for a full test report.

smoors · 2024-06-10T13:49:12Z

@boegelbot please test @ jsc-zen3

boegelbot · 2024-06-10T13:50:08Z

@smoors: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=20513 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_20513 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 4347

Test results coming soon (I hope)...

- notification for comment with ID 2158431627 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2024-06-10T13:50:42Z

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.4, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.18
See https://gist.github.com/boegelbot/b97d026e8d8b8c4322ca792254eb57fc for a full test report.

smoors · 2024-06-11T09:22:24Z

@boegelbot: please test @ generoso

boegelbot · 2024-06-11T09:25:09Z

@smoors: Request for testing this PR well received on login1

PR test command 'EB_PR=20513 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_20513 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 13714

Test results coming soon (I hope)...

- notification for comment with ID 2160222192 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2024-06-11T09:25:55Z

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
cns1 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/6089af52c440116584e90f8d8acbe633 for a full test report.

smoors

lgtm

smoors · 2024-06-11T09:28:25Z

Going in, thanks @verdurin!

adding easyconfigs: bcl-convert-4.2.7-2el7.x86_64.eb

fb5442b

verdurin added the update label May 10, 2024

Add missing rpmrebuild builddep

4da987b

verdurin added this to the 4.x milestone Jun 5, 2024

smoors mentioned this pull request Jun 5, 2024

Problem with the Rpm easyblock? easybuilders/easybuild-easyblocks#3350

Open

smoors approved these changes Jun 11, 2024

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smoors removed this from the 4.x milestone Jun 11, 2024

smoors added this to the release after 4.9.2 milestone Jun 11, 2024

smoors merged commit 3bd8082 into easybuilders:develop Jun 11, 2024
9 checks passed

Micket mentioned this pull request Jun 19, 2024

sync with develop (20240619) #20851

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{bio}[system/system] bcl-convert v4.2.7-2 w/ el7.x86_64 #20513

{bio}[system/system] bcl-convert v4.2.7-2 w/ el7.x86_64 #20513

verdurin commented May 10, 2024

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smoors commented Jun 11, 2024

{bio}[system/system] bcl-convert v4.2.7-2 w/ el7.x86_64 #20513

{bio}[system/system] bcl-convert v4.2.7-2 w/ el7.x86_64 #20513

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