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Update main.nf
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kauralasoo committed Apr 23, 2021
1 parent a24c259 commit 8a33eca
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions main.nf
Original file line number Diff line number Diff line change
Expand Up @@ -77,7 +77,7 @@ if (params.use_permutation) {
process extract_lead_var_pairs{
tag "${qtl_subset}"
publishDir "${params.outdir}/leadpairs/", mode: 'copy', pattern: "*.leadpairs.tsv"
container = 'quay.io/eqtlcatalogue/colocalisation:v20.01.1'
container = 'quay.io/eqtlcatalogue/colocalisation:v21.01.1'

input:
tuple val(qtl_subset), file(eqtl_ss), file(eqtl_ss_index), file(perm_res) from extract_lead_var_pairs_ch
Expand All @@ -104,7 +104,7 @@ if (params.use_permutation) {
process run_coloc{
tag "${gwas_id}_${qtl_subset}"
// publishDir "${params.outdir}/coloc_results_batch/", mode: 'copy'
container 'quay.io/eqtlcatalogue/colocalisation:v20.01.1'
container 'quay.io/eqtlcatalogue/colocalisation:v21.01.1'

input:
each batch_index from 1..params.n_batches
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