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24 changes: 12 additions & 12 deletions README.md
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A workflow for reproducible and open scientific articles
[\[docs\]](https://show-your.work)

[**emcee**](https://github.com/dfm/emcee) — 1343 stars / 427 forks
[**emcee**](https://github.com/dfm/emcee) — 1344 stars / 426 forks
The Python ensemble sampling toolkit for affine-invariant MCMC
[\[docs\]](https://emcee.readthedocs.io)

Expand All @@ -76,8 +76,8 @@ Render probabilistic graphical models using matplotlib

## Publications

refereed: 96 / first author: 9 / citations: 16,182 / h-index: 43
(2023-08-07)
refereed: 96 / first author: 9 / citations: 16,183 / h-index: 43
(2023-08-08)

### Refereed publications

Expand Down Expand Up @@ -581,14 +581,6 @@ Journal, **154**, 220
([arXiv:1703.09710](http://arxiv.org/abs/1703.09710)) \[[518
citations](https://ui.adsabs.harvard.edu/abs/2017AJ....154..220F)\]

Montet, Benjamin T.; Tovar, Guadalupe; & **Foreman-Mackey, Daniel**,
2017, *[Long-term Photometric Variability in Kepler Full-frame Images:
Magnetic Cycles of Sun-like
Stars](http://dx.doi.org/10.3847/1538-4357/aa9e00)*, The Astrophysical
Journal, **851**, 116
([arXiv:1705.07928](http://arxiv.org/abs/1705.07928)) \[[73
citations](https://ui.adsabs.harvard.edu/abs/2017ApJ...851..116M)\]

Grunblatt, Samuel K.; Huber, Daniel; Gaidos, Eric; Lopez, Eric D.;
*et al.* (incl. **DFM**), 2017, *[Seeing Double with K2: Testing
Re-inflation with Two Remarkably Similar Planets around Red Giant Branch
Expand All @@ -597,6 +589,14 @@ Journal, **154**, 254
([arXiv:1706.05865](http://arxiv.org/abs/1706.05865)) \[[58
citations](https://ui.adsabs.harvard.edu/abs/2017AJ....154..254G)\]

Montet, Benjamin T.; Tovar, Guadalupe; & **Foreman-Mackey, Daniel**,
2017, *[Long-term Photometric Variability in Kepler Full-frame Images:
Magnetic Cycles of Sun-like
Stars](http://dx.doi.org/10.3847/1538-4357/aa9e00)*, The Astrophysical
Journal, **851**, 116
([arXiv:1705.07928](http://arxiv.org/abs/1705.07928)) \[[73
citations](https://ui.adsabs.harvard.edu/abs/2017ApJ...851..116M)\]

Luger, Rodrigo; **Foreman-Mackey, Daniel**; & Hogg, David W., 2017,
*[Linear Models for Systematics and
Nuisances](http://dx.doi.org/10.3847/2515-5172/aa96b5)*, Research Notes
Expand Down Expand Up @@ -791,7 +791,7 @@ citations](https://ui.adsabs.harvard.edu/abs/2013AJ....146....7B)\]
Jonathan, 2013, *[emcee: The MCMC
Hammer](http://dx.doi.org/10.1086/670067)*, Publications of the
Astronomical Society of the Pacific, **125**, 306
([arXiv:1202.3665](http://arxiv.org/abs/1202.3665)) \[[7667
([arXiv:1202.3665](http://arxiv.org/abs/1202.3665)) \[[7668
citations](https://ui.adsabs.harvard.edu/abs/2013PASP..125..306F)\]

Weisz, Daniel R.; Fouesneau, Morgan; Hogg, David W.; Rix, Hans-Walter;
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"volume": null,
"year": "2023"
},
{
"arxiv": null,
"authors": [
"Foreman-Mackey, Daniel"
],
"citations": 1,
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"doi": "10.5281/zenodo.7646759",
"page": null,
"pub": "Zenodo",
"pubdate": "2023-02-16",
"title": "dfm/tinygp: The tiniest of Gaussian Process libraries",
"url": "https://ui.adsabs.harvard.edu/abs/2023zndo...7646759F",
"volume": null,
"year": "2023"
},
{
"arxiv": null,
"authors": [
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"Schmerler, Steve",
"Killestein, Thomas"
],
"citations": 2,
"citations": 1,
"doctype": "software",
"doi": "10.5281/zenodo.7269074",
"page": null,
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"Angus, Ruth",
"Daylan, Tansu"
],
"citations": 8,
"citations": 9,
"doctype": "software",
"doi": "10.5281/zenodo.6609296",
"page": null,
Expand Down Expand Up @@ -1292,7 +1308,7 @@
"Schmerler, Steve",
"Theorashid"
],
"citations": 3,
"citations": 2,
"doctype": "software",
"doi": "10.5281/zenodo.6473662",
"page": null,
Expand Down Expand Up @@ -2179,7 +2195,7 @@
"Price-Whelan, Adrian M.",
"Savel, Arjun B."
],
"citations": 167,
"citations": 98,
"doctype": "software",
"doi": "10.5281/zenodo.1998447",
"page": null,
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"Leung, Henry",
"Scott, Spencer"
],
"citations": 28,
"citations": 17,
"doctype": "software",
"doi": "10.5281/zenodo.4737461",
"page": null,
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"Koposov, Sergey",
"Major, Syrtis"
],
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"citations": 29,
"doctype": "software",
"doi": "10.5281/zenodo.4159870",
"page": null,
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"Barentsen, Geert",
"Barclay, Tom"
],
"citations": 15,
"citations": 8,
"doctype": "software",
"doi": "10.5281/zenodo.3462740",
"page": null,
Expand Down Expand Up @@ -5046,24 +5062,6 @@
"volume": "154",
"year": "2017"
},
{
"arxiv": "1705.07928",
"authors": [
"Montet, Benjamin T.",
"Tovar, Guadalupe",
"Foreman-Mackey, Daniel"
],
"citations": 73,
"doctype": "article",
"doi": "10.3847/1538-4357/aa9e00",
"page": 116,
"pub": "The Astrophysical Journal",
"pubdate": "2017-12-00",
"title": "Long-term Photometric Variability in Kepler Full-frame Images: Magnetic Cycles of Sun-like Stars",
"url": "https://ui.adsabs.harvard.edu/abs/2017ApJ...851..116M",
"volume": "851",
"year": "2017"
},
{
"arxiv": "1706.05865",
"authors": [
Expand Down Expand Up @@ -5097,6 +5095,24 @@
"volume": "154",
"year": "2017"
},
{
"arxiv": "1705.07928",
"authors": [
"Montet, Benjamin T.",
"Tovar, Guadalupe",
"Foreman-Mackey, Daniel"
],
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"pub": "The Astrophysical Journal",
"pubdate": "2017-12-00",
"title": "Long-term Photometric Variability in Kepler Full-frame Images: Magnetic Cycles of Sun-like Stars",
"url": "https://ui.adsabs.harvard.edu/abs/2017ApJ...851..116M",
"volume": "851",
"year": "2017"
},
{
"arxiv": "1710.11136",
"authors": [
Expand Down Expand Up @@ -5845,7 +5861,7 @@
"authors": [
"Foreman-Mackey, Daniel"
],
"citations": 1264,
"citations": 1265,
"doctype": "article",
"doi": "10.21105/joss.00024",
"page": 24,
Expand Down Expand Up @@ -5967,7 +5983,7 @@
"Brewer, Brendon J.",
"Hogg, David W."
],
"citations": 15,
"citations": 26,
"doctype": "software",
"doi": "10.5281/zenodo.53155",
"page": null,
Expand Down Expand Up @@ -6084,7 +6100,7 @@
"Hogg, David W.",
"Brewer, Brendon J."
],
"citations": 38,
"citations": 72,
"doctype": "software",
"doi": "10.5281/zenodo.45906",
"page": null,
Expand Down Expand Up @@ -6553,7 +6569,7 @@
"Sick, Jonathan",
"Johnson, Ben"
],
"citations": 171,
"citations": 105,
"doctype": "software",
"doi": "10.5281/zenodo.12157",
"page": null,
Expand Down Expand Up @@ -6624,7 +6640,7 @@
"Hogg, David W.",
"Brewer, Brendon J."
],
"citations": 42,
"citations": 49,
"doctype": "software",
"doi": "10.5281/zenodo.11020",
"page": null,
Expand Down Expand Up @@ -6779,7 +6795,7 @@
"Lang, Dustin",
"Goodman, Jonathan"
],
"citations": 7667,
"citations": 7668,
"doctype": "article",
"doi": "10.1086/670067",
"page": 306,
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4 changes: 2 additions & 2 deletions data/repos.json
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"description": "The Python ensemble sampling toolkit for affine-invariant MCMC",
"url": "https://github.com/dfm/emcee",
"homepageUrl": "https://emcee.readthedocs.io",
"forkCount": 427,
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"stargazers": {
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"totalCount": 1344
},
"watchers": {
"totalCount": 88
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6 changes: 3 additions & 3 deletions tex/pubs_ref.tex
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\item[{\color{numcolor}\scriptsize31}] \textbf{Foreman-Mackey, Daniel}; Agol, Eric; Ambikasaran, Sivaram; \& Angus, Ruth, 2017, \doi{10.3847/1538-3881/aa9332}{Fast and Scalable Gaussian Process Modeling with Applications to Astronomical Time Series}, The Astronomical Journal, \textbf{154}, 220 (\arxiv{1703.09710}) [\href{https://ui.adsabs.harvard.edu/abs/2017AJ....154..220F}{518 citations}]

\item[{\color{numcolor}\scriptsize30}] Montet, Benjamin T.; Tovar, Guadalupe; \& \textbf{Foreman-Mackey, Daniel}, 2017, \doi{10.3847/1538-4357/aa9e00}{Long-term Photometric Variability in Kepler Full-frame Images: Magnetic Cycles of Sun-like Stars}, The Astrophysical Journal, \textbf{851}, 116 (\arxiv{1705.07928}) [\href{https://ui.adsabs.harvard.edu/abs/2017ApJ...851..116M}{73 citations}]
\item[{\color{numcolor}\scriptsize30}] Grunblatt, Samuel K.; Huber, Daniel; Gaidos, Eric; Lopez, Eric D.; \etal\ (incl.\ \textbf{DFM}), 2017, \doi{10.3847/1538-3881/aa932d}{Seeing Double with K2: Testing Re-inflation with Two Remarkably Similar Planets around Red Giant Branch Stars}, The Astronomical Journal, \textbf{154}, 254 (\arxiv{1706.05865}) [\href{https://ui.adsabs.harvard.edu/abs/2017AJ....154..254G}{58 citations}]

\item[{\color{numcolor}\scriptsize29}] Grunblatt, Samuel K.; Huber, Daniel; Gaidos, Eric; Lopez, Eric D.; \etal\ (incl.\ \textbf{DFM}), 2017, \doi{10.3847/1538-3881/aa932d}{Seeing Double with K2: Testing Re-inflation with Two Remarkably Similar Planets around Red Giant Branch Stars}, The Astronomical Journal, \textbf{154}, 254 (\arxiv{1706.05865}) [\href{https://ui.adsabs.harvard.edu/abs/2017AJ....154..254G}{58 citations}]
\item[{\color{numcolor}\scriptsize29}] Montet, Benjamin T.; Tovar, Guadalupe; \& \textbf{Foreman-Mackey, Daniel}, 2017, \doi{10.3847/1538-4357/aa9e00}{Long-term Photometric Variability in Kepler Full-frame Images: Magnetic Cycles of Sun-like Stars}, The Astrophysical Journal, \textbf{851}, 116 (\arxiv{1705.07928}) [\href{https://ui.adsabs.harvard.edu/abs/2017ApJ...851..116M}{73 citations}]

\item[{\color{numcolor}\scriptsize28}] Luger, Rodrigo; \textbf{Foreman-Mackey, Daniel}; \& Hogg, David W., 2017, \doi{10.3847/2515-5172/aa96b5}{Linear Models for Systematics and Nuisances}, Research Notes of the American Astronomical Society, \textbf{1}, 7 (\arxiv{1710.11136}) [\href{https://ui.adsabs.harvard.edu/abs/2017RNAAS...1....7L}{19 citations}]

Expand Down Expand Up @@ -186,6 +186,6 @@

\item[{\color{numcolor}\scriptsize3}] Brewer, Brendon J.; \textbf{Foreman-Mackey, Daniel}; \& Hogg, David W., 2013, \doi{10.1088/0004-6256/146/1/7}{Probabilistic Catalogs for Crowded Stellar Fields}, The Astronomical Journal, \textbf{146}, 7 (\arxiv{1211.5805}) [\href{https://ui.adsabs.harvard.edu/abs/2013AJ....146....7B}{39 citations}]

\item[{\color{numcolor}\scriptsize2}] \textbf{Foreman-Mackey, Daniel}; Hogg, David W.; Lang, Dustin; \& Goodman, Jonathan, 2013, \doi{10.1086/670067}{emcee: The MCMC Hammer}, Publications of the Astronomical Society of the Pacific, \textbf{125}, 306 (\arxiv{1202.3665}) [\href{https://ui.adsabs.harvard.edu/abs/2013PASP..125..306F}{7667 citations}]
\item[{\color{numcolor}\scriptsize2}] \textbf{Foreman-Mackey, Daniel}; Hogg, David W.; Lang, Dustin; \& Goodman, Jonathan, 2013, \doi{10.1086/670067}{emcee: The MCMC Hammer}, Publications of the Astronomical Society of the Pacific, \textbf{125}, 306 (\arxiv{1202.3665}) [\href{https://ui.adsabs.harvard.edu/abs/2013PASP..125..306F}{7668 citations}]

\item[{\color{numcolor}\scriptsize1}] Weisz, Daniel R.; Fouesneau, Morgan; Hogg, David W.; Rix, Hans-Walter; \etal\ (incl.\ \textbf{DFM}), 2013, \doi{10.1088/0004-637X/762/2/123}{The Panchromatic Hubble Andromeda Treasury. IV. A Probabilistic Approach to Inferring the High-mass Stellar Initial Mass Function and Other Power-law Functions}, The Astrophysical Journal, \textbf{762}, 123 (\arxiv{1211.6105}) [\href{https://ui.adsabs.harvard.edu/abs/2013ApJ...762..123W}{31 citations}]
2 changes: 1 addition & 1 deletion tex/pubs_select.tex
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\item[{\color{numcolor}\scriptsize2}] Ambikasaran, Sivaram; \textbf{Foreman-Mackey, Daniel}; Greengard, Leslie; Hogg, David W.; \& O'Neil, Michael, 2016, \doi{10.1109/TPAMI.2015.2448083}{Fast Direct Methods for Gaussian Processes}, IEEE Transactions on Pattern Analysis and Machine Intelligence, \textbf{38}, 252 (\arxiv{1403.6015}) [\href{https://scholar.google.com/scholar?cites=7122560326210979193,5194420368165307096,3347404430934682534}{627 citations}]

\item[{\color{numcolor}\scriptsize1}] \textbf{Foreman-Mackey, Daniel}; Hogg, David W.; Lang, Dustin; \& Goodman, Jonathan, 2013, \doi{10.1086/670067}{emcee: The MCMC Hammer}, Publications of the Astronomical Society of the Pacific, \textbf{125}, 306 (\arxiv{1202.3665}) [\href{https://ui.adsabs.harvard.edu/abs/2013PASP..125..306F}{7667 citations}]
\item[{\color{numcolor}\scriptsize1}] \textbf{Foreman-Mackey, Daniel}; Hogg, David W.; Lang, Dustin; \& Goodman, Jonathan, 2013, \doi{10.1086/670067}{emcee: The MCMC Hammer}, Publications of the Astronomical Society of the Pacific, \textbf{125}, 306 (\arxiv{1202.3665}) [\href{https://ui.adsabs.harvard.edu/abs/2013PASP..125..306F}{7668 citations}]
2 changes: 1 addition & 1 deletion tex/pubs_summary.tex
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@@ -1 +1 @@
refereed: 96 / first author: 9 / citations: 16,182 / h-index: 43 (2023-08-07)
refereed: 96 / first author: 9 / citations: 16,183 / h-index: 43 (2023-08-08)
2 changes: 1 addition & 1 deletion tex/repos.tex
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\item \href{https://github.com/showyourwork/showyourwork}{{\bf showyourwork}} --- 461 stars / 38 forks \\
A workflow for reproducible and open scientific articles \href{https://show-your.work}{[docs]}

\item \href{https://github.com/dfm/emcee}{{\bf emcee}} --- 1343 stars / 427 forks \\
\item \href{https://github.com/dfm/emcee}{{\bf emcee}} --- 1344 stars / 426 forks \\
The Python ensemble sampling toolkit for affine-invariant MCMC \href{https://emcee.readthedocs.io}{[docs]}

\item \href{https://github.com/dfm/corner.py}{{\bf corner.py}} --- 444 stars / 216 forks \\
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