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updating af_backprop version
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sokrypton authored Jun 20, 2022
1 parent 4ec7228 commit c602ced
Showing 1 changed file with 3 additions and 3 deletions.
6 changes: 3 additions & 3 deletions colab_notebooks/quickdemo_wAF2.ipynb
Original file line number Diff line number Diff line change
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" with io.capture_output() as captured:\n",
" # install ALPHAFOLD\n",
" if not os.path.isdir(\"af_backprop\"):\n",
" %shell git clone -b beta https://github.com/sokrypton/af_backprop.git\n",
" %shell git clone https://github.com/sokrypton/af_backprop.git\n",
" %shell pip -q install biopython dm-haiku ml-collections py3Dmol\n",
" %shell wget -qnc https://raw.githubusercontent.com/sokrypton/ColabFold/main/beta/colabfold.py\n",
" if not os.path.isdir(\"params\"):\n",
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"\n",
" # get params\n",
" model_param = data.get_model_haiku_params(model_name=\"model_3_ptm\", data_dir=\".\")\n",
" model_runner = alphafold_model.RunModel(cfg, model_param, is_training=False)\n",
" model_runner = alphafold_model.RunModel(cfg, model_param, is_training=False, recycle_mode=\"none\")\n",
"\n",
" model_params = []\n",
" for k in [1,2,3,4,5]:\n",
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},
"nbformat": 4,
"nbformat_minor": 0
}
}

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