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Add bam support for counting intervals #40

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Add bam support for counting intervals #40

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Commits on Oct 24, 2024

  1. first working pass at using noodles to read bam and report counts

    @donaldcampbelljr
    donaldcampbelljr committed Oct 24, 2024
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  2. add attempt at determining Map length (commented out)

    @donaldcampbelljr
    donaldcampbelljr committed Oct 24, 2024
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Commits on Oct 25, 2024

  1. add bedGraph count compression

    @donaldcampbelljr
    donaldcampbelljr committed Oct 25, 2024
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  2. finish adding bedGraph count compression

    @donaldcampbelljr
    donaldcampbelljr committed Oct 25, 2024
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  3. fix mutability issue for bam reading into chrom vec

    @donaldcampbelljr
    donaldcampbelljr committed Oct 25, 2024
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  4. change sorted to start instead of all for BedGraphToBigWigArgs

    @donaldcampbelljr
    donaldcampbelljr committed Oct 25, 2024
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  5. Merge pull request #41 from databio/dev_bedGraph_compress_counts 

    Dev bed graph compress counts
    @donaldcampbelljr
    donaldcampbelljr authored Oct 25, 2024
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Commits on Oct 29, 2024

  1. add narrowpeak test

    @donaldcampbelljr
    donaldcampbelljr committed Oct 29, 2024
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Commits on Nov 4, 2024

  1. fix missing zoom attribute

    @donaldcampbelljr
    donaldcampbelljr committed Nov 4, 2024
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  2. fix narrowpeak accumulation counting error

    @donaldcampbelljr
    donaldcampbelljr committed Nov 4, 2024
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