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use pkgdown github workflow
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craddm committed Oct 23, 2024
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1 change: 1 addition & 0 deletions .Rbuildignore
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Expand Up @@ -16,3 +16,4 @@
^\.github$
^CITATION\.cff$
^vignettes/single_subj_N170$
^pkgdown$
50 changes: 50 additions & 0 deletions .github/workflows/pkgdown.yaml
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@@ -0,0 +1,50 @@
# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
on:
push:
branches: [main, master]
pull_request:
branches: [main, master]
release:
types: [published]
workflow_dispatch:

name: pkgdown.yaml

permissions: read-all

jobs:
pkgdown:
runs-on: ubuntu-latest
# Only restrict concurrency for non-PR jobs
concurrency:
group: pkgdown-${{ github.event_name != 'pull_request' || github.run_id }}
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
permissions:
contents: write
steps:
- uses: actions/checkout@v4

- uses: r-lib/actions/setup-pandoc@v2

- uses: r-lib/actions/setup-r@v2
with:
use-public-rspm: true

- uses: r-lib/actions/setup-r-dependencies@v2
with:
extra-packages: any::pkgdown, local::.
needs: website

- name: Build site
run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE)
shell: Rscript {0}

- name: Deploy to GitHub pages 🚀
if: github.event_name != 'pull_request'
uses: JamesIves/[email protected]
with:
clean: false
branch: gh-pages
folder: docs
1 change: 1 addition & 0 deletions .gitignore
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Expand Up @@ -14,3 +14,4 @@ vignettes/linear_modelling/*.txt
vignettes/single_subj_N170/*.set
vignettes/single_subj_N170/*.fdt
vignettes/single_subj_N170/*.set
docs
2 changes: 1 addition & 1 deletion DESCRIPTION
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Expand Up @@ -57,7 +57,7 @@ Suggests:
mgcv,
infomax (>= 0.1.0),
Hmisc
URL: https://github.com/craddm/eegUtils, https://craddm.github.io/eegUtils
URL: https://github.com/craddm/eegUtils, https://craddm.github.io/eegUtils, https://craddm.github.io/eegUtils/
BugReports: https://github.com/craddm/eegUtils/issues
Config/testthat/edition: 3
Config/testthat/parallel: true
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188 changes: 92 additions & 96 deletions _pkgdown.yml
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@@ -1,107 +1,103 @@
url: http://craddm.github.io/eegUtils

url: https://craddm.github.io/eegUtils/
development:
mode: auto

template:
bootstrap: 5
params:
bootswatch: flatly

navbar:
components:
twitter:
icon: "fab fa-twitter fa-lg"
icon: fab fa-twitter fa-lg
href: https://www.twitter.com/matt_craddock

reference:
- title: IO
desc: >
Functions for importing data or electrode information into R.
contents:
- starts_with("import")
- export_bva
- title: Processing
desc: >
Functions for pre-processing and processing data
contents:
- apply_ica
- compute_csd
- eeg_average
- eeg_combine
- eeg_decompose
- eeg_downsample
- eeg_filter
- eeg_reference
- electrode_locations
- epoch_data
- interp_elecs
- rm_baseline
- run_ICA
- tag_events
- title: Artefact rejection
desc: >
Functions for artefact rejection.
contents:
- starts_with("ar")
- epoch_stats
- channel_stats
- view_artefacts
- title: Selection
desc: Functions for selecting subsets of data
contents:
- starts_with("select")
- filter
- title: Plotting
desc: >
Functions for plotting data
contents:
- browse_data
- erp_image
- erp_raster
- erp_scalp
- geom_topo
- get_scalpmap
- interactive_scalp
- starts_with("plot_")
- stat_scalpmap
- stat_scalpcontours
- topoplot
- view_ica
- title: Frequency analysis
desc: Functions related to (time-)frequency analysis
contents:
- compute_itc
- compute_psd
- compute_tfr
- title: Converters
desc: Functions for converting objects to data.frames
contents:
- starts_with("as.")
- title: Accessors
desc: Functions for accessing and modifying specific elements of an object
contents:
- channels
- epochs
- events
- channel_names
- get_participant_id
- get_recording
- title: internal
contents:
- starts_with("print")
- starts_with("is")
- epoch_data.default
- tag_epochs
- demo_epochs
- demo_spatial
- eeg_epochs
- eeg_ICA
- cycle_calc
- tag_epochs
- rotate_angle
- list_epochs
- list_events
- fit_glm
- eegUtils-package
- eeg_summarise
- title: IO
desc: |
Functions for importing data or electrode information into R.
contents:
- starts_with("import")
- export_bva
- title: Processing
desc: |
Functions for pre-processing and processing data
contents:
- apply_ica
- compute_csd
- eeg_average
- eeg_combine
- eeg_decompose
- eeg_downsample
- eeg_filter
- eeg_reference
- electrode_locations
- epoch_data
- interp_elecs
- rm_baseline
- run_ICA
- tag_events
- title: Artefact rejection
desc: |
Functions for artefact rejection.
contents:
- starts_with("ar")
- epoch_stats
- channel_stats
- view_artefacts
- title: Selection
desc: Functions for selecting subsets of data
contents:
- starts_with("select")
- filter
- title: Plotting
desc: |
Functions for plotting data
contents:
- browse_data
- erp_image
- erp_raster
- erp_scalp
- geom_topo
- get_scalpmap
- interactive_scalp
- starts_with("plot_")
- stat_scalpmap
- stat_scalpcontours
- topoplot
- view_ica
- title: Frequency analysis
desc: Functions related to (time-)frequency analysis
contents:
- compute_itc
- compute_psd
- compute_tfr
- title: Converters
desc: Functions for converting objects to data.frames
contents: starts_with("as.")
- title: Accessors
desc: Functions for accessing and modifying specific elements of an object
contents:
- channels
- epochs
- events
- channel_names
- get_participant_id
- get_recording
- title: internal
contents:
- starts_with("print")
- starts_with("is")
- epoch_data.default
- tag_epochs
- demo_epochs
- demo_spatial
- eeg_epochs
- eeg_ICA
- cycle_calc
- tag_epochs
- rotate_angle
- list_epochs
- list_events
- fit_glm
- eegUtils-package
- eeg_summarise

1 change: 1 addition & 0 deletions man/eegUtils-package.Rd

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