[pre-commit.ci] pre-commit autoupdate (#96)

* [pre-commit.ci] pre-commit autoupdate

updates:
- [github.com/astral-sh/ruff-pre-commit: v0.1.9 → v0.2.0](astral-sh/ruff-pre-commit@v0.1.9...v0.2.0)
- [github.com/psf/black: 23.12.1 → 24.1.1](psf/black@23.12.1...24.1.1)

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* update PR labeler

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Nathaniel Starkman <[email protected]>

.github/labeler.yml

@@ -1,15 +1,19 @@
-# Infrastructure Labels
 Infrastructure:
-  - .github/**/*
-  - .pre-commit-config.yaml
-  - .readthedocs.yml
-  - .gitignore
-  - pyproject.toml
-  - setup.cfg
+- changed-files:
+  - any-glob-to-any-file:
+    - .github/**/*
+    - .pre-commit-config.yaml
+    - .readthedocs.yml
+    - .gitignore
+    - pyproject.toml
+    - setup.cfg
 
 GitHub:
-  - .github/**/*
+- changed-files:
+  - any-glob-to-any-file:
+    - .github/**/*
 
-# Docs Labels
 Docs:
-  - docs/**/*
+- changed-files:
+  - any-glob-to-any-file:
+    - docs/**/*

.github/workflows/labeler.yml

@@ -0,0 +1,24 @@
+name: "Pull Request Labeler"
+
+on:
+  issues:
+    types:
+    - opened
+  pull_request_target:
+    types:
+    - opened
+
+jobs:
+  labeler:
+    permissions:
+      contents: read
+      pull-requests: write
+    runs-on: ubuntu-latest
+    steps:
+    - uses: actions/checkout@v4 # Uploads repository content to the runner
+      with:
+        repository: "cosmology-api/cosmology.api"
+    - uses: actions/labeler@v5
+      with:
+        repo-token: "${{ secrets.GITHUB_TOKEN }}"
+        sync-labels: true

.pre-commit-config.yaml

@@ -33,14 +33,14 @@ repos:
       - id: text-unicode-replacement-char
 
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: "v0.1.9"
+    rev: "v0.2.0"
     hooks:
       - id: ruff
         args:
           - --fix
 
   - repo: https://github.com/psf/black
-    rev: 23.12.1
+    rev: 24.1.1
     hooks:
       - id: black
         additional_dependencies: [toml]

docs/_ext/sphinx_ext_autosummary_context.py

@@ -1,4 +1,5 @@
 """Monkey-patching autosummary to emit the autosummary-gather-context event."""
+
 from __future__ import annotations
 
 from inspect import signature
@@ -45,9 +46,9 @@ def setup(app: Sphinx) -> None:
         app.disconnect(listener_id)
     else:
         # patch generate_autosummary_docs to call the wrapper above
-        generate_autosummary_docs.__globals__[
-            "generate_autosummary_content"
-        ] = generate_autosummary_content_with_context
+        generate_autosummary_docs.__globals__["generate_autosummary_content"] = (
+            generate_autosummary_content_with_context
+        )
 
         # register the new event
         app.add_event("autosummary-gather-context")

docs/dev/new.rst

@@ -66,12 +66,10 @@ As an example, let's look at the base :class:`~cosmology.api.Cosmology` protocol
         name: str | None
 
         @property
-        def __cosmology_namespace__(self):
-            ...
+        def __cosmology_namespace__(self): ...
 
         @property
-        def constants(self):
-            ...
+        def constants(self): ...
 
 .. Sybil doesn't have the __name__ in globals
 .. skip: start

docs/dev/wrapping.rst

@@ -184,16 +184,15 @@ Array API will work. For this example we will add support for
 
         def transverse_comoving_distance(
             self, z1: InputT, z2: InputT | None = None
-        ) -> Array:
-            ...  # up to you to implement this
+        ) -> Array: ...  # up to you to implement this
 
-        def comoving_volume(self, z1: InputT, z2: InputT | None = None) -> Array:
-            ...  # up to you to implement this
+        def comoving_volume(
+            self, z1: InputT, z2: InputT | None = None
+        ) -> Array: ...  # up to you to implement this
 
         def differential_comoving_volume(
             self, z1: InputT, z2: InputT | None = None
-        ) -> Array:
-            ...  # up to you to implement this
+        ) -> Array: ...  # up to you to implement this
 
 
 Great! Now we have a wrapper that implements the base Cosmology API and supports

docs/introduction.rst

@@ -214,17 +214,14 @@ describe any of the Array libraries.
 
     class Array(Protocol):
         @property
-        def shape(self) -> tuple[int, ...]:
-            ...
+        def shape(self) -> tuple[int, ...]: ...
 
         @property
-        def dtype(self) -> Any:
-            ...
+        def dtype(self) -> Any: ...
 
         ...
 
-        def __add__(self, other: "Array") -> "Array":
-            ...
+        def __add__(self, other: "Array") -> "Array": ...
 
 
 Applying this to our ``add`` function, we get the following.

docs/quickstart.rst

@@ -150,8 +150,7 @@ The attribute-related interfaces have only the return-type parameter.
 
     class HasOmegaDE0(Protocol[Array]):
         @property
-        def Omega_de0(self) -> Array:
-            ...
+        def Omega_de0(self) -> Array: ...
 
 
 The method-related interfaces have both parameters.
@@ -160,8 +159,7 @@ The method-related interfaces have both parameters.
 .. code-block:: python
 
     class HasOmegaDE(Protocol[Array, InputT]):
-        def Omega_de(self, z: InputT) -> Array:
-            ...
+        def Omega_de(self, z: InputT) -> Array: ...
 
 
 Now we can build the correct ``hubble_constant`` function, e.g. that operates on

docs/tests/test_arrays.py

@@ -1,4 +1,5 @@
 """Test Array."""
+
 from __future__ import annotations
 
 import array

src/cosmology/api/__init__.py

@@ -1,4 +1,5 @@
 """The Cosmology API standard."""
+
 from __future__ import annotations
 
 from cosmology.api._components import (

src/cosmology/api/_array_api/array.py

@@ -194,11 +194,9 @@ def __rshift__(self: Self, other: int | Self, /) -> Self:
 
     def __setitem__(
         self: Self,
-        key: int
-        | slice
-        | EllipsisType
-        | tuple[int | slice | EllipsisType, ...]
-        | Array,
+        key: (
+            int | slice | EllipsisType | tuple[int | slice | EllipsisType, ...] | Array
+        ),
         value: float | bool | Self,
         /,
     ) -> None:

src/cosmology/api/_array_api/dtype.py

@@ -27,5 +27,6 @@ def __eq__(self: DType, other: DType, /) -> bool:
         -------
         out: bool
             a boolean indicating whether the data type objects are equal.
+
         """
         ...

src/cosmology/api/_components.py

@@ -17,7 +17,6 @@ class HasOmegaTot0(Protocol[Array]):
     @property
     def Omega_tot0(self) -> Array:
         r"""Omega total; the total density/critical density at z=0."""
-        ...
 
 
 @runtime_checkable
@@ -35,8 +34,8 @@ def Omega_tot(self, z: InputT, /) -> Array:
         Returns
         -------
         Array
+
         """
-        ...
 
 
 @runtime_checkable
@@ -58,7 +57,6 @@ class HasOmegaK0(Protocol[Array]):
     @property
     def Omega_k0(self) -> Array:
         r"""Omega curvature; the effective curvature density/critical density at z=0."""
-        ...
 
 
 @runtime_checkable
@@ -76,8 +74,8 @@ def Omega_k(self, z: InputT, /) -> Array:
         Returns
         -------
         Array
+
         """
-        ...
 
 
 @runtime_checkable
@@ -99,7 +97,6 @@ class HasOmegaM0(Protocol[Array]):
     @property
     def Omega_m0(self) -> Array:
         r"""Omega matter; the matter density/critical density at z=0."""
-        ...
 
 
 @runtime_checkable
@@ -122,8 +119,8 @@ def Omega_m(self, z: InputT, /) -> Array:
         -----
         This does not include neutrinos, even if non-relativistic at the
         redshift of interest; see `Omega_nu`.
+
         """
-        ...
 
 
 @runtime_checkable
@@ -145,7 +142,6 @@ class HasOmegaB0(Protocol[Array]):
     @property
     def Omega_b0(self) -> Array:
         r"""Omega baryon; the baryon density/critical density at z=0."""
-        ...
 
 
 @runtime_checkable
@@ -163,8 +159,8 @@ def Omega_b(self, z: InputT, /) -> Array:
         Returns
         -------
         Array
+
         """
-        ...
 
 
 @runtime_checkable
@@ -186,7 +182,6 @@ class HasOmegaNu0(Protocol[Array]):
     @property
     def Omega_nu0(self) -> Array:
         r"""Omega neutrino; the neutrino density/critical density at z=0."""
-        ...
 
 
 @runtime_checkable
@@ -204,8 +199,8 @@ def Omega_nu(self, z: InputT, /) -> Array:
         Returns
         -------
         Array
+
         """
-        ...
 
 
 @runtime_checkable
@@ -215,7 +210,6 @@ class HasNeff(Protocol[Array]):
     @property
     def Neff(self) -> Array:
         r"""Effective number of neutrino species."""
-        ...
 
 
 @runtime_checkable
@@ -225,7 +219,6 @@ class HasMNu(Protocol[Array]):
     @property
     def m_nu(self) -> tuple[Array, ...]:
         r"""Neutrino mass(es) in eV."""
-        ...
 
 
 @runtime_checkable
@@ -249,7 +242,6 @@ class HasOmegaDE0(Protocol[Array]):
     @property
     def Omega_de0(self) -> Array:
         r"""Omega dark energy; the dark energy density/critical density at z=0."""
-        ...
 
 
 @runtime_checkable
@@ -267,8 +259,8 @@ def Omega_de(self, z: InputT, /) -> Array:
         Returns
         -------
         Array
+
         """
-        ...
 
 
 @runtime_checkable
@@ -286,7 +278,6 @@ class HasOmegaDM0(Protocol[Array]):
     @property
     def Omega_dm0(self) -> Array:
         r"""Omega dark matter; the dark matter density/critical density at z=0."""
-        ...
 
 
 @runtime_checkable
@@ -309,8 +300,8 @@ def Omega_dm(self, z: InputT, /) -> Array:
         -----
         This does not include neutrinos, even if non-relativistic at the
         redshift of interest.
+
         """
-        ...
 
 
 @runtime_checkable
@@ -332,7 +323,6 @@ class HasOmegaGamma0(Protocol[Array]):
     @property
     def Omega_gamma0(self) -> Array:
         r"""Omega gamma; the photon density/critical density at z=0."""
-        ...
 
 
 @runtime_checkable
@@ -350,8 +340,8 @@ def Omega_gamma(self, z: InputT, /) -> Array:
         Returns
         -------
         Array
+
         """
-        ...
 
 
 @runtime_checkable

src/cosmology/api/_constants.py

@@ -44,6 +44,7 @@ class CosmologyConstantsNamespace(Protocol):
     When used in a runtime check, `isinstance` will only look for the existence
     of objects, not details like their type. For example, ``c`` should be in
     units of kilometers per second, but `isinstance` will not check this.
+
     """
 
     @property