The Childhood Cancer Data Lab is developing a series of short course modules to train researchers studying childhood cancer to perform reproducible analyses.
This module focuses on the analysis of RNA-seq data. To set up your Docker RNA-seq environment, you need to follow the instructions specified in the schedule under "Getting Started". Setting up this environment will provide you with all the software and packages you need for the RNA-seq workshop modules.
Briefly, you need to have successfully installed Docker. Then you need to obtain the workshop data from the flash drives.
Lastly, there are two different sets of instructions for setting up your RNA-seq Docker container:
steps that are dependent on sufficiently fast internet and
steps that do not require internet but use an image from a flashdrive.
Check the schedule and follow the instructions that are linked on
Docker container set up.