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PatchSorter's (PS) Wiki is complete documentation that explains how to use this tool and the reasons behind it. Here is the catalog for PS's wiki page:
- Easy “install” (git clone) and uses common libraries (PyTorch, OpenCV)
- User interface is web-based, allowing remote access
- Works with modest GPUs and across all operating systems
- No internet connection required:
Suitable for hospitals with private data and firewall restrictions
- Uses deep learning: suitable for many different types of objects (U-net)
- Programmatic access to all system components
- Highly modular – allowing easy upgrading
Please use below to cite this paper if you find this repository useful or if you use the software shared here in your research.
Talawalla T., Toth R., Walker C., Horlings H., Rea K., Rottenberg S., Madabhushi A., Janowczyk A., "PatchSorter a high throughput open-source digital pathology tool for histologic object labeling", European Society of Digital and Integrative Pathology (ESDIP), Germany, 2022