Deprecate positions to use indices
#258
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* move CUDA to an extension * fix CUDA deps * fix exports * no Requires * reformat toml * Ext * canonical * generalise copy_to_output * add the actual extension * fix
* add MakieOutput extension * bugfix atomics * fix atomics again * more cuda * bugfixes * cleanup
* update packages * add base dep versions * no toml test
* bugfixes * better messages * uncomment masking * chainstate fix * fix makie columns * bugfix gpu * better DD show
* Update boundaries.jl * Update boundaries.jl * Several changes (see descr) I added a test using Reflect(), update _inbounds for ::Reflect, bump Stencils to 0.3, and update index * Update simulationdata.jl * Update Project.toml
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Addresses problems in #254
@remylegoff this both updates the readme examples and makes sure the old version still works