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mqstat: replace g as well as gb when parsing qstat.
check hpc_script #73: Commit 1a0a254 pushed by wwood
October 30, 2024 07:00 1h 14m 54s main
October 30, 2024 07:00 1h 14m 54s
add conda --prefix param to mcreate
check hpc_script #72: Commit af88a17 pushed by sternp
September 19, 2024 00:03 14s main
September 19, 2024 00:03 14s
Update $PATH for recurm-v0.3.0
check hpc_script #71: Commit 4e07a12 pushed by sternp
August 27, 2024 00:21 13s main
August 27, 2024 00:21 13s
adjust CPU and MEM warnings
check hpc_script #70: Commit d7706f7 pushed by sternp
August 11, 2024 23:35 12s main
August 11, 2024 23:35 12s
Adjust mqstat to account for WEKA using 4 CPU
check hpc_script #69: Commit 0d08938 pushed by sternp
July 18, 2024 22:41 4h 42m 36s main
July 18, 2024 22:41 4h 42m 36s
reverse crontab change
check hpc_script #68: Commit 29b656a pushed by sternp
May 1, 2024 03:53 12s main
May 1, 2024 03:53 12s
Add biobank rsync to crontab
check hpc_script #67: Commit 5d6b351 pushed by sternp
May 1, 2024 03:36 11s main
May 1, 2024 03:36 11s
Merge pull request #16 from centre-for-microbiome-research/snake_config
check hpc_script #66: Commit 5943186 pushed by sternp
April 22, 2024 04:51 18s main
April 22, 2024 04:51 18s
Merge branch 'main' into snake_config
check hpc_script #65: Commit 131e54d pushed by wwood
April 22, 2024 04:33 18s snake_config
April 22, 2024 04:33 18s
Merge pull request #20 from centre-for-microbiome-research/snakemake_…
check hpc_script #64: Commit c89edf0 pushed by sternp
March 13, 2024 21:45 23s main
March 13, 2024 21:45 23s
snakemake_configs: Incorporate snakemake 8 configs.
check hpc_script #63: Commit 955c7f3 pushed by wwood
March 13, 2024 21:32 19s snakemake_mem_mb_fix
March 13, 2024 21:32 19s
snakemake_mqsub: Handle when mem_mb is missing in snakemake v8.
check hpc_script #62: Commit 3070167 pushed by wwood
March 13, 2024 21:19 14s snakemake_mem_mb_fix
March 13, 2024 21:19 14s
ssh config example: Adjust for lyra-mb.
check hpc_script #61: Commit 569c9d8 pushed by wwood
March 7, 2024 06:01 14s main
March 7, 2024 06:01 14s
ssh config example: Adjust for lyra-mb.
check hpc_script #60: Commit a675343 pushed by wwood
March 7, 2024 04:37 12s lyra-mb
March 7, 2024 04:37 12s
mperms, bs, bash_extras
check hpc_script #59: Commit 3fdce88 pushed by sternp
February 23, 2024 05:21 16s main
February 23, 2024 05:21 16s
Merge pull request #18 from centre-for-microbiome-research/oldpwd_return
check hpc_script #58: Commit 86c5360 pushed by sternp
February 23, 2024 05:06 16s main
February 23, 2024 05:06 16s
cmr_bashrc_extras: Return to OLDPWD not $HOME.
check hpc_script #57: Commit ce26bbe pushed by wwood
February 18, 2024 21:25 13s oldpwd_return
February 18, 2024 21:25 13s
cmr_bashrc_extras: Return to OLDPWD not $HOME.
check hpc_script #56: Commit 6ec8990 pushed by wwood
February 18, 2024 21:24 20s oldpwd_return
February 18, 2024 21:24 20s
add queue nodes to disk report on ssh
check hpc_script #55: Commit e57d195 pushed by sternp
November 29, 2023 03:37 13s main
November 29, 2023 03:37 13s
add queue nodes to disk report on ssh
check hpc_script #54: Commit d5356ef pushed by sternp
November 29, 2023 03:34 13s main
November 29, 2023 03:34 13s
add explanation for exist_ok
check hpc_script #53: Commit 5709afa pushed by wwood
September 8, 2023 05:42 13s main
September 8, 2023 05:42 13s
snakemake: profiles: Set rerun-incomplete.
check hpc_script #52: Commit df58138 pushed by wwood
September 6, 2023 20:38 14s main
September 6, 2023 20:38 14s
mqsub: Fix regression.
check hpc_script #51: Commit 9697c6c pushed by wwood
August 28, 2023 05:46 16s main
August 28, 2023 05:46 16s
mqsub: Do not default to microbiome conda env.
check hpc_script #50: Commit 747f262 pushed by wwood
August 28, 2023 05:21 16s main
August 28, 2023 05:21 16s
snakemake_configs: Add local, apply rerun-incomplete.
check hpc_script #49: Commit 7dfb2c1 pushed by wwood
August 22, 2023 08:22 16s snake_config
August 22, 2023 08:22 16s