v2.0

• added tree_monophyly script to check for taxa monophyly
• aln_filter script checks for duplicate haplotypes within species (this may have been redundant)
• progress counters to several scripts
• more jupyter notebooks

v1.4.3

python scripts will be added to /bin in anaconda environment

v1.4.2

fixing for package

v1.4.1

• added setup.py for anaconda package

v1.4

• changed project hierarchy for anaconda packaging
• merged 3rdcodonremover into aln_filter.py
• added chao1 estimates to aln_hapcounter.py
• fixed typos, slight speedups etc

v1.3

fixed a bug with the functionality that was introduced in version 1.2, where not all inter specific comparisons were included in the per species averages

version 1.2

Added functionality to the pdistancer.py script to output p-distance stats per species, as well as nearest neighbor(s) and corresponding p-distance(s).

v1.1

new release to obtain DOI

v1.0

Seems like everything is working, but there is room for optimization.