Fix Dailies and Python 3.12 Bug (#321)

* added workflow_call

* updated link

* updated wheel==0.43.0

* try adding conda

* undo adding conda

* upgrade setup-python to v5

* wheel==0.41.0

* updated scanimage-tiff-reader

* revert wheel version

* updated changelog

.github/workflows/dailies.yaml

@@ -27,4 +27,4 @@ jobs:
             subject: ROIExtractors Daily Failure
             to: ${{ secrets.DAILY_FAILURE_EMAIL_LIST }}  # add more with commas, no separation
             from: NWB Inspector
-            body: "The daily workflow for ROIExtractors failed: please check status at https://github.com/catalystneuro/roiextractors/actions/workflows/dailies.yml"
+            body: "The daily workflow for ROIExtractors failed: please check status at https://github.com/catalystneuro/roiextractors/actions/workflows/dailies.yaml"

.github/workflows/dev-testing.yaml

@@ -16,10 +16,10 @@ jobs:
       matrix:
         python-version: ["3.8", "3.9", "3.10", "3.11", "3.12"]
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v4
       - run: git fetch --prune --unshallow --tags
       - name: Setup Python ${{ matrix.python-version }}
-        uses: actions/setup-python@v2
+        uses: actions/setup-python@v5
         with:
           python-version: ${{ matrix.python-version }}
 

.github/workflows/run-tests.yml

@@ -2,6 +2,7 @@ name: Full Tests
 on:
   pull_request:
   workflow_dispatch:
+  workflow_call:
 
 concurrency:
   group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}
@@ -33,10 +34,10 @@ jobs:
         python-version: ["3.8", "3.9", "3.10", "3.11", "3.12"]
         os: [ubuntu-latest, windows-latest, macos-latest, macos-13] # macos-13 is the latest version of macOS with Intel chip
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v4
       - run: git fetch --prune --unshallow --tags
       - name: Setup Python ${{ matrix.python-version }}
-        uses: actions/setup-python@v2
+        uses: actions/setup-python@v5
         with:
           python-version: ${{ matrix.python-version }}
 

.github/workflows/update-testing-data.yml

@@ -1,6 +1,7 @@
 name: update-testing-data
 on:
   workflow_dispatch:
+  workflow_call:
 
 jobs:
   run:

CHANGELOG.md

@@ -8,6 +8,8 @@
 
 * Remove unecessary scipy import error handling [#315]((https://github.com/catalystneuro/roiextractors/pull/315)
 
+* Added daily testing workflow and fixed bug with python 3.12 by upgrading scanimage-tiff-reader version: [PR #321](https://github.com/catalystneuro/roiextractors/pull/321)
+
 # v0.5.8
 
 ### Fixes

requirements-full.txt

@@ -1,4 +1,4 @@
 tifffile>=2018.10.18
-scanimage-tiff-reader==1.4.1
+scanimage-tiff-reader==1.4.1.4
 neuroconv[video]>=0.4.6  # Uses the VideoCaptureContext class
 natsort>=8.3.1