removed HAVE_H5PY

catalystneuro · Sep 19, 2024 · 44edf19 · 44edf19
1 parent 4e4a062
commit 44edf19
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diff --git a/src/roiextractors/extractors/schnitzerextractor/cnmfesegmentationextractor.py b/src/roiextractors/extractors/schnitzerextractor/cnmfesegmentationextractor.py
@@ -147,7 +147,6 @@ def write_segmentation(segmentation_object: SegmentationExtractor, save_path: Pa
         AssertionError
             If save_path is not a *.mat file.
         """
-        assert HAVE_H5PY, "To use Cnmfe install scipy/h5py: \n\n pip install scipy/h5py \n\n"
         save_path = Path(save_path)
         assert save_path.suffix == ".mat", "'save_path' must be a *.mat file"
         if save_path.is_file():

diff --git a/src/roiextractors/extractors/schnitzerextractor/extractsegmentationextractor.py b/src/roiextractors/extractors/schnitzerextractor/extractsegmentationextractor.py
@@ -151,11 +151,6 @@ class NewExtractSegmentationExtractor(
     """
 
     extractor_name = "NewExtractSegmentation"
-    installed = HAVE_H5PY  # check at class level if installed or not
-    installation_mesg = (
-        "To use NewExtractSegmentation install h5py: \n\n pip install h5py \n\n"
-        # error message when not installed
-    )
     is_writable = False
     mode = "file"
 
@@ -288,10 +283,8 @@ class LegacyExtractSegmentationExtractor(SegmentationExtractor):
     """
 
     extractor_name = "LegacyExtractSegmentation"
-    installed = HAVE_H5PY  # check at class level if installed or not
     is_writable = False
     mode = "file"
-    installation_mesg = "To use extract install h5py: \n\n pip install h5py \n\n"  # error message when not installed
 
     def __init__(
         self,