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Ndx fiber photometry #24

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merged 12 commits into from
May 23, 2024
Merged

Ndx fiber photometry #24

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af24c58
initial switch to ndx-fiber-photometry
pauladkisson May 2, 2024
a7d6f90
reorganize to match schematic order
pauladkisson May 2, 2024
7c92e62
added fiber diameter
pauladkisson May 3, 2024
894b59f
switched to create_fiber_photometry_table_region
pauladkisson May 3, 2024
29d9319
removed optional/unknown dichroic wavelength
pauladkisson May 3, 2024
a490162
added BandOpticalFilter
pauladkisson May 6, 2024
48de0c4
uncomment example sessions
pauladkisson May 6, 2024
92eac5c
switched to lab metadata fp table
pauladkisson May 21, 2024
a30f7ed
consolidated optical fibers
pauladkisson May 21, 2024
c30450f
consolidated excitation sources
pauladkisson May 21, 2024
1e533bf
renamed commanded voltage series for consistency
pauladkisson May 22, 2024
6ab82e1
consolidated fiber photometry response series
pauladkisson May 22, 2024
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5 changes: 3 additions & 2 deletions frozen_dependencies.txt
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Expand Up @@ -43,7 +43,7 @@ fscacher==0.4.0
fsspec==2023.12.2
gast==0.4.0
h5py==3.10.0
hdmf==3.12.2
hdmf==3.13.0
hdmf_zarr==0.5.0
humanize==4.9.0
identify==2.5.33
Expand Down Expand Up @@ -86,6 +86,7 @@ more-itertools==10.2.0
multidict==6.0.4
natsort==8.4.0
ndx-events==0.2.0
ndx-fiber-photometry @ git+https://github.com/catalystneuro/ndx-fiber-photometry.git@14e05cda86026db694c1c577918284f435b7ec10
ndx-grayscalevolume==0.0.2
ndx-icephys-meta==0.1.0
ndx-photometry @ git+https://github.com/catalystneuro/ndx-photometry.git@c1284c91a7e0a5dfd19f84bbf683e17fa607d4ec
Expand All @@ -96,7 +97,7 @@ neuroconv==0.4.7
nodeenv==1.8.0
numcodecs==0.11.0
numpy==1.26.3
nwbinspector==0.4.33
nwbinspector==0.4.35
nwbwidgets==0.11.3
openpyxl==3.1.2
packaging==23.2
Expand Down
2 changes: 1 addition & 1 deletion requirements.txt
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Expand Up @@ -6,7 +6,7 @@ dandi
pre-commit
pytest
ndx-events
ndx-photometry @ git+https://github.com/catalystneuro/ndx-photometry.git@main
ndx-fiber-photometry @ git+https://github.com/catalystneuro/ndx-fiber-photometry.git@add_fiber_photometry_lab_meta_data
ipykernel
tdt
openpyxl
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