Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Until the extractor and interface is fully integrated with NeuroConv, adding them here to be able to move forward with the conversion. The
bioformats_jar
conda dependency is added directly into the make_env.yml file, and the AICSImageIO is also added to the conversion folder's pip requirements file.The full conversion of the example data was tested and the stubbed version is uploaded here.
Note that the CXD file doesn't contain metadata about the
session_start_time
, for that information we are relying on the fiber photometry data.