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Final updates #18

Merged
merged 27 commits into from
Sep 3, 2024
Merged

Final updates #18

merged 27 commits into from
Sep 3, 2024

Commits on Sep 2, 2024

  1. fix sampling frequency for dual-wavelength sessions

    @weiglszonja
    weiglszonja committed Sep 2, 2024
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  2. force boolean type for "included" ROIs

    @weiglszonja
    weiglszonja committed Sep 2, 2024
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  3. fix fiber photometry metadata for 415nm

    @weiglszonja
    weiglszonja committed Sep 2, 2024
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  4. fix for inconsistent naming of avi files

    @weiglszonja
    weiglszonja committed Sep 2, 2024
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  5. add 415nm to fiber photometry name suffices

    @weiglszonja
    weiglszonja committed Sep 2, 2024
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  6. add 'video1' and 'video2' to TTL rules

    @weiglszonja
    weiglszonja committed Sep 2, 2024
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Commits on Sep 3, 2024

  1. update README.md

    @weiglszonja
    weiglszonja committed Sep 3, 2024
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  2. to align the timestamps of the second imaging data use the starting t… 

    …ime of the second behavior data for dual wavelength sessions
    @weiglszonja
    weiglszonja committed Sep 3, 2024
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  3. add aligned_starting_time optional argument to the convert session sc… 

    …ript
    @weiglszonja
    weiglszonja committed Sep 3, 2024
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  4. propagate aligned_starting_time to NWBConverter

    @weiglszonja
    weiglszonja committed Sep 3, 2024
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  5. remove unused imports

    @weiglszonja
    weiglszonja committed Sep 3, 2024
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  6. update conversion notes

    @weiglszonja
    weiglszonja committed Sep 3, 2024
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  7. remove FilePathType from bioformats_utils.py

    @weiglszonja
    weiglszonja committed Sep 3, 2024
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  8. remove FilePathType from cxdimagingextractor.py

    @weiglszonja
    weiglszonja committed Sep 3, 2024
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  9. remove FilePathType from cxdimaginginterface.py

    @weiglszonja
    weiglszonja committed Sep 3, 2024
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  10. remove FilePathType from tiffimaginginterface.py

    @weiglszonja
    weiglszonja committed Sep 3, 2024
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  11. remove FilePathType from vu2024_behaviorinterface.py

    @weiglszonja
    weiglszonja committed Sep 3, 2024
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  12. remove FilePathType from vu2024_fiberphotometryinterface.py

    @weiglszonja
    weiglszonja committed Sep 3, 2024
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  13. remove FilePathType from vu2024_segmentationinterface.py

    @weiglszonja
    weiglszonja committed Sep 3, 2024
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  14. remove FilePathType from utils

    @weiglszonja
    weiglszonja committed Sep 3, 2024
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  15. strict requirements.txt

    @weiglszonja
    weiglszonja committed Sep 3, 2024
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  16. add excitation_mode optional argument to conditionally update the des… 

    …cription for the imaging data
    @weiglszonja
    weiglszonja committed Sep 3, 2024
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  17. update notes

    @weiglszonja
    weiglszonja committed Sep 3, 2024
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  18. add convert all sessions

    @weiglszonja
    weiglszonja committed Sep 3, 2024
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  19. remove older version of convert all sessions

    @weiglszonja
    weiglszonja committed Sep 3, 2024
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  20. add nwb mapping to notes

    @weiglszonja
    weiglszonja committed Sep 3, 2024
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  21. update tutorial

    @weiglszonja
    weiglszonja committed Sep 3, 2024
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