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Uses the array data structure for ParticleField and pullbacks for AD #13

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Uses the array data structure for ParticleField and pullbacks for AD #13

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cibinjoseph
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This PR is to review the changes made and make sure everything looks good. This may not need to be merged into master immediately.

@rymanderson
add FLOWFMM compatibility functions
2dfb484
@rymanderson
prepare for workstation test
0f3923b
@rymanderson
remove DifferentialEquations dependency
19e4867
@rymanderson
add benchmark script
e2240f0
@rymanderson
use MVectors
3b41d05
@rymanderson
add more benchmarks to script
6271257
@rymanderson
update FMM
5ff91fc
@rymanderson
passing unit tests with FLOWFMM
2b99805
@rymanderson
replace abstract ::Function type definition with concrete parameteric…
bf0682c 
… type
@rymanderson
bug fix
b96b2e8
@rymanderson
made UJ type-stable (matching ExaFMM benchmarks)
e7edc2c
@rymanderson
bug fix
2e4de05
@rymanderson
prepare benchmark
97daa09
@rymanderson
prep new benchmark
189b009
@rymanderson
passing unit tests
40f856f
@rymanderson
make expansion_order consistent and prep benchmark
b31c96f
@rymanderson
prep benchmark with fmm
1caa44d
@rymanderson
specify julia-1.6
78bf00b
@rymanderson
allow changing pfield.Uinf by using less restrictive type
56d5d34
@rymanderson
bug fix
c106932
@rymanderson
remove duplicate eltype definition
69bcba8
@rymanderson
add nonzero_sigma parameter
2c8f93d
@rymanderson
change nonzero_sigma default =false
8b6271e
@rymanderson
initialize particle field with custom float type
d9b28e7
@rymanderson
merge conflict on workstation
1101eb6
@rymanderson
ForwardDiff compatibility
c163a52
@rymanderson
add custom_UJ function
ceeaac6
@rymanderson
working with panels
ad44787
@rymanderson
fix viscous and SFS syntax error
df9de1a
@rymanderson
update fields explicitly in remove_particle
4fdbf47
rymanderson and others added 30 commits July 12, 2024 13:52
@rymanderson
backwards-compatibility for DynamicSFS convenience syntax
e5aa5e8
@rymanderson
Add sort function to divisors
b5db201
@rymanderson
merge conflict
9be1cb9
Fix tests for numerical useGPU
bf7de7c
Ignore runfiles and scripts
d494f76
Add max thread limits and padding in multiples of 32
35856cb
@cibinjoseph
Revert to target_index for cpu direct()
b910152
@rymanderson
Make direct_gpu!() use source_indices and target_indices and revert d…
ab6f5dc 
…irect!() to previous form
@rymanderson
Make compatible with new direct_gpu!() in FastMultipole
c7eff92
@rymanderson
Add GPU kernel for multiple gpus
398d35a
@rymanderson
Correct leapfrog example to use multiple gpus
5905f85
Bug fixes for multiple gpus
75b2f65
Use gpu array list to avoid variable scoping issue in multiple-gpu ke…
d8fbc94 
…rnel
Set useGPU to 2 as default
450baec
Reduce parsing of for loops. Break fast
e0acfd4
Fix for massive allocations in check_launch()
164d7be
Remove T=T in arguments inside kernel
bad13ac
Move toggle_sfs condition outside loops
971a15a
@rymanderson
Adapt warmup function so that it compiles on all available gpus
dbbf6ab
@BTV25
addition to fluiddomain to allow Uinf included
5456de9
@rymanderson
Perform self-interaction on one gpu for entire particle field when le…
a34bafd 
…af count is 8
@rymanderson
Add additional conditions for single self-interaction on gpu
0d5243d
Remove unnecessary view for GPU DtoH copy
a11c782
@rymanderson
Reduce register pressure by using Int32 indices
ca301de
Correct dimension of target_system particles in gpu kernel
9d211ea
@rymanderson
merge conflicts
cf387d4
@rymanderson
upgrade FastMultipole 0.3.0
fb76ed1
@rymanderson
remove extraneous function parameter
6b8ba74
@rymanderson
update FastMultipole to version 0.3.0
6dc1f35
@rymanderson
add relative error option to fmm
99f8f2e
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@rymanderson rymanderson rymanderson left review comments

@Eric-P-Green Eric-P-Green Awaiting requested review from Eric-P-Green

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4 participants
@cibinjoseph @rymanderson @Eric-P-Green @BTV25