Sprint 6
Closed Jun 10, 2024
100% complete
Annotation
- Get instance up with GO codebase for indexing and perl for saving
- hg19 and hg38 built on new codebase with 108 features for IBDGC
- Output MNP linkage information
- Add pLi and Loeuf scores for genes, if possible with existing builders, else document strategy
- Add MPC scores for variants, if possible with existing builders, else document strategy
- N…
Annotation
- Get instance up with GO codebase for indexing and perl for saving
- hg19 and hg38 built on new codebase with 108 features for IBDGC
- Output MNP linkage information
- Add pLi and Loeuf scores for genes, if possible with existing builders, else document strategy
- Add MPC scores for variants, if possible with existing builders, else document strategy
- New annotation features and new annotation output (Change SNP to MNP where needed)
- (stretch) Allow settings for you to not annotate everything
Ancestry
- Develop better strategy for marker missingness and imputation strategy (PPCA)
- Fix how data is returned (needs to be read from file) -> also for configuration files
- QC measure
Proteomics
- Make a plan for new join procedure
- Expose proteomic endpoints correctly to go through webapp and is authenticated and jobs are behind a queue
User management
- Search by at least sample ID and subject ID through all pages instead of current page
- Scroll horizontally
- Add row, should be able to edit
- Allow drag and drop new file into manage your experiments
- Allow drag and drop new file into existing file when your table is open in manage your experiments, should only use that particular experiment (no new modal pops up)
- Allow template to be downloaded
- Add support for xlsx files
PRS
- Finish v1 of LD clumping procedure using genetic maps
- Add specific ancestry connection to genetic maps
- Add functionality for GWAS catalog as input
- Add p-value thresholding with GWAS catalog inputs
This milestone is closed.
No open issues remain. View closed issues or see open milestones in this repository.