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Cloud support for BuildBamIndex outputs. #1925

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cmnbroad
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@cmnbroad cmnbroad commented Dec 4, 2023

Fixes #1827

Draft until #1852 goes in, since this needs the cloud test infrastructure in that PR so we can add a test for this change on an actual cloud input.

(edited by tsato 6/25/24)
This PR now adds .crai index creation for .cram files. Fixes #1472.

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@takutosato This is ready for a test to be added as discussed earlier

@takutosato takutosato self-assigned this Jun 20, 2024
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