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1 change: 1 addition & 0 deletions JUMP_production/readme.md
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## Production pipelines

### 1. Feature extraction pipelines
- Recommended CellProfiler version: 4.13
- `JUMP_illum_LoadData_v1.cppipe`
- `JUMP_segment_LoadData_v1.cppipe` : This is not necessary for data generation. It is useful for testing segmentation parameters across your dataset prior to running the analysis pipeline. It outputs an overlay image of the Nuclei and Cells objects identified using the segmentation parameters set in the pipeline overlaid on the input image.
- `JUMP_analysis_v2.cppipe` : Second version of the analysis pipeline with additional modules for special mitochondrial features, including EnhanceOrSuppressFeatures, Threshold, MorphologicalSkeleton, MeasureObjectSkeleton, MeasureObjectIntensityDistribution. Mito special features will contain either mito_skel or mito_tubeness in their name.
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