use macos-14 as macos arm build runner.

.github/workflows/build.yml

@@ -198,8 +198,10 @@ jobs:
         working-directory: dist
 
       - name: Install test prerequisites
+        # pytest 8.2.0~8.2.1 changed the behaivour of --import-mode, can't ignore local cyvcf2 folder.
+        # So we need to pin it before it breaks again.
         run: |
-          pip install pytest pytest-cov
+          pip install pytest==8.1.2 pytest-cov
 
       - name: Test
         run: |

.github/workflows/wheels.yml

@@ -28,7 +28,7 @@ jobs:
           - [ubuntu-22.04, manylinux_aarch64]
           - [ubuntu-22.04, musllinux_aarch64]
           - [macos-12, macosx_x86_64]
-          - [macos-12, macosx_arm64]
+          - [macos-14, macosx_arm64]
         python-version: [pp310, cp37, cp38, cp39, cp310, cp311, cp312]
         exclude:
           # pp310, cp37, cp38 on musllinux is not support
@@ -49,10 +49,13 @@ jobs:
             python-version: cp310
           - buildplat: [ubuntu-22.04, musllinux_aarch64]
             python-version: pp310
-          # cp37, pp310 on macos arm64 is not supported
-          - buildplat: [macos-12, macosx_arm64]
+          # cp37 on macos arm64 is not supported
+          - buildplat: [macos-14, macosx_arm64]
             python-version: cp37
-          - buildplat: [macos-12, macosx_arm64]
+          # cp38 pp310 on macos arm64 have some problem
+          - buildplat: [macos-14, macosx_arm64]
+            python-version: cp38
+          - buildplat: [macos-14, macosx_arm64]
             python-version: pp310
 
     steps:
@@ -65,7 +68,7 @@ jobs:
         uses: docker/setup-qemu-action@v3
 
       - name: Build wheels
-        uses: pypa/cibuildwheel@v2.16.4
+        uses: pypa/cibuildwheel@v2.18.1
         with:
           package-dir: .
           output-dir: wheelhouse
@@ -85,16 +88,15 @@ jobs:
           CIBW_REPAIR_WHEEL_COMMAND_LINUX: 'LD_LIBRARY_PATH="$LD_LIBRARY_PATH:/usr/local/lib64" && auditwheel repair -w {dest_dir} {wheel}'
 
           # macos
-          CIBW_ARCHS_MACOS: auto64 arm64
+          CIBW_ARCHS_MACOS: auto64
           CIBW_BEFORE_BUILD_MACOS: "{project}/ci/osx-deps"
-
+          CIBW_REPAIR_WHEEL_COMMAND_MACOS: "delocate-wheel --require-archs {delocate_archs} -w {dest_dir} -v {wheel}"
+
           # build
           CIBW_ENVIRONMENT: >-
             CYVCF2_HTSLIB_CONFIGURE_OPTIONS="--enable-libcurl --enable-s3 --enable-lzma --enable-bz2 --with-libdeflate"
             CYTHONIZE=1
           CIBW_TEST_COMMAND: "{project}/ci/test"
-          # macOS build arm64 on x86_64 with cross-compiler, not support test
-          CIBW_TEST_SKIP: "*-macosx_arm64"
 
       # Enable tmate debugging of manually-triggered workflows if the input option was provided
       - name: Setup tmate session

ci/linux-deps

@@ -27,7 +27,7 @@ alpine)
 centos)
     yum install -y bzip2-devel xz-devel libcurl-devel openssl-devel
 
-    LIBDEFLATE_VERSION=1.19
+    LIBDEFLATE_VERSION=1.20
     curl -L -o libdeflate-v"$LIBDEFLATE_VERSION".tar.gz https://github.com/ebiggers/libdeflate/archive/refs/tags/v"$LIBDEFLATE_VERSION".tar.gz
     tar xzf libdeflate-v"$LIBDEFLATE_VERSION".tar.gz
     cd libdeflate-"$LIBDEFLATE_VERSION"

ci/osx-deps

@@ -2,25 +2,24 @@
 
 set -euo pipefail
 
-export DYLD_LIBRARY_PATH=/usr/local/lib
 # same with python
 export MACOSX_DEPLOYMENT_TARGET=10.9
 
-brew install automake
+brew install automake libdeflate
 brew unlink xz
 
-# build liblzma and libdelfate for muti arch
+# build liblzma and libdelfate for deployment target 10.9
 
-XZ_VERSION=5.4.5
+XZ_VERSION=5.4.6
 curl -L -o xz-$XZ_VERSION.tar.gz "https://github.com/tukaani-project/xz/releases/download/v$XZ_VERSION/xz-$XZ_VERSION.tar.gz"
 tar -xf xz-$XZ_VERSION.tar.gz
 cd xz-$XZ_VERSION
 cmake -B build && cmake --build build
-cd ./build && make install
+cd ./build && sudo make install
 
-LIBDEFLATE_VERSION=1.19
+LIBDEFLATE_VERSION=1.20
 curl -L -o libdeflate-v"$LIBDEFLATE_VERSION".tar.gz https://github.com/ebiggers/libdeflate/archive/refs/tags/v"$LIBDEFLATE_VERSION".tar.gz
 tar xzf libdeflate-v"$LIBDEFLATE_VERSION".tar.gz
 cd libdeflate-"$LIBDEFLATE_VERSION"
 cmake -B build && cmake --build build
-cd ./build && make install
+cd ./build && sudo make install