docker image name changed from tdt to taxonomy-development-tools

.github/workflows/docker-publish.yml

@@ -14,7 +14,7 @@ env:
   # Use docker.io for Docker Hub if empty
   REGISTRY: ghcr.io
   # github.repository as <account>/<repo>
-  IMAGE_NAME: tdt
+  IMAGE_NAME: ${{ github.repository }}
 
 
 jobs:

docs/Build.md

@@ -7,5 +7,5 @@ You can download TDT Docker image through following the steps defined in project
 Alternatively, you can build TDT docker image in your local. Checkout the project and run given command in the project root folder:
 
 ```sh
-docker build -t "ghcr.io/brain-bican/tdt" .
+docker build -t "ghcr.io/brain-bican/taxonomy-development-tools" .
 ```

docs/Curation.md

@@ -1,6 +1,9 @@
 # CCN2 Taxonomy Curation with the Taxonomy Development Tools
 
 1. Pull the latest TDT docker image via following the steps defined in the project [GitHub Container Registry](https://github.com/brain-bican/taxonomy-development-tools/pkgs/container/tdt). 
+```
+docker pull ghcr.io/brain-bican/taxonomy-development-tools:latest
+```
 
 2. Place your data (ex. [AIT115_annotation_sheet_std.tsv](examples/nhp_basal_ganglia/AIT115_annotation_sheet_std.tsv)) and configuration file (ex. [test_config.yaml](examples/nhp_basal_ganglia/test_config.yaml)) into your project's `input_data` folder.  
 

docs/NewRepo.md

@@ -26,7 +26,7 @@ CONTAINER ID   IMAGE     COMMAND   CREATED   STATUS    PORTS     NAMES
 - First, make sure you have Docker running (you will see the Docker whale in your toolbar on a Mac)
 - To make sure you have the latest version of the TDT installed, run in the command line
 
-  `docker pull brain-bican/tdt`
+  `docker pull ghcr.io/brain-bican/taxonomy-development-tools:latest`
 
 **NOTE** The very first time you run this it may be slow, while docker downloads necessary images. Don't worry, subsequent runs should be much faster!
 

seed-via-docker.bat

@@ -1,2 +1,2 @@
 ::BATCH file to seed new taxonomy repo via docker
-docker run -v %userprofile%/.gitconfig:/root/.gitconfig -v %cd%:/work -w /work --rm -ti ghcr.io/brain-bican/tdt /tools/tdt.py seed %*
+docker run -v %userprofile%/.gitconfig:/root/.gitconfig -v %cd%:/work -w /work --rm -ti ghcr.io/brain-bican/taxonomy-development-tools /tools/tdt.py seed %*

seed-via-docker.sh

@@ -2,7 +2,7 @@
 
 set -e
 
-TDT_IMAGE=${TDT_IMAGE:-tdt}
+TDT_IMAGE=${TDT_IMAGE:-taxonomy-development-tools}
 TDT_TAG=${TDT_TAG:-latest}
 TDT_GITNAME=${TDT_GITNAME:-$(git config --get user.name)}
 TDT_GITEMAIL=${TDT_GITEMAIL:-$(git config --get user.email)}