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generate another formats
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@actions-user
actions-user committed Sep 7, 2023
1 parent eeeb897 commit 6a81f5f
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80 changes: 59 additions & 21 deletions erdiagram-autogen/kbmodel.md
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Original file line number Diff line number Diff line change
@@ -1,9 +1,22 @@
```mermaid
erDiagram
LibraryPool {
integer tube_avg_size
integer avg_size_bp
float tube_contents
string tube_internal_label
string id
iri_type iri
category_typeList category
stringList type
label_type name
narrative_text description
}
Agent {
uriorcurieList affiliation
string address
stringList provided_by
uriorcurieList xref
label_type full_name
label_typeList synonym
string id
iri_type iri
category_typeList category
Expand Down Expand Up @@ -47,9 +60,9 @@ LibraryAliquoting {
Library {
string method
datetime creation_date
integer avg_size
float input_amount
boolean library_prep_pass
float input_quantity
boolean process_pass
integer avg_size_bp
float quantification_fmol
float quantification_ng
float quantification_nm
Expand Down Expand Up @@ -78,10 +91,10 @@ LibraryConstruction {
}
AmplifiedCdna {
string method
float amplified_quantity
float input_quantity
boolean process_pass
integer pcr_cycles
float percent_cdna_longer_than_400bp
boolean rna_amplification_pass
string id
iri_type iri
category_typeList category
Expand Down Expand Up @@ -146,7 +159,7 @@ CellEnrichment {
DissociatedCellSample {
string cell_prep_type
string facs_population_plan
integer number_of_cells_collected
integer num_cells_collected
string id
iri_type iri
category_typeList category
Expand All @@ -168,7 +181,7 @@ CellDissociation {
}
TissueSample {
string roi_plan
string region_of_interest_label
string roi_label
string id
iri_type iri
category_typeList category
Expand All @@ -189,7 +202,6 @@ TissueDissecting {
narrative_text description
}
BrainSection {
string barcode
integer ordinal
string id
iri_type iri
Expand All @@ -211,7 +223,6 @@ BrainSegmentSectioning {
narrative_text description
}
BrainSegment {
string barcode
string anatomical_division
string id
iri_type iri
Expand All @@ -234,17 +245,26 @@ BrainExtraction {
}
Donor {
SexType sex
date date_of_birth
date date_of_death
string age_at_death
date birth_date
date death_date
string death_age
string full_genotype
label_type in_taxon_label
uriorcurieList affiliation
string address
stringList provided_by
uriorcurieList xref
label_type full_name
label_typeList synonym
string id
iri_type iri
category_typeList category
stringList type
label_type name
narrative_text description
}
ProvEntity {
}
Activity {
stringList provided_by
Expand All @@ -265,9 +285,6 @@ Entity {
stringList type
label_type name
narrative_text description
}
ProvEntity {
}
ProvActivity {
Expand Down Expand Up @@ -338,74 +355,95 @@ Checksum {
LibraryPool ||--}o LibraryAliquot : "wasDerivedFrom"
LibraryPool ||--}o LibraryPooling : "wasGeneratedBy"
LibraryPool ||--}o Agent : "wasAttributedTo"
LibraryPool ||--}o Attribute : "has attribute"
Agent ||--}o Attribute : "has attribute"
LibraryPooling ||--}o LibraryAliquot : "used"
LibraryPooling ||--}o LibraryPool : "generated"
LibraryPooling ||--}o Agent : "wasAssociatedWith"
LibraryPooling ||--}o Attribute : "has attribute"
LibraryAliquot ||--}o Library : "wasDerivedFrom"
LibraryAliquot ||--}o LibraryAliquoting : "wasGeneratedBy"
LibraryAliquot ||--}o Agent : "wasAttributedTo"
LibraryAliquot ||--}o Attribute : "has attribute"
LibraryAliquoting ||--}o Library : "used"
LibraryAliquoting ||--}o LibraryAliquot : "generated"
LibraryAliquoting ||--}o Agent : "wasAssociatedWith"
LibraryAliquoting ||--}o Attribute : "has attribute"
Library ||--}o AmplifiedCdna : "wasDerivedFrom"
Library ||--}o LibraryConstruction : "wasGeneratedBy"
Library ||--}o Agent : "wasAttributedTo"
Library ||--}o Attribute : "has attribute"
LibraryConstruction ||--}o AmplifiedCdna : "used"
LibraryConstruction ||--}o Library : "generated"
LibraryConstruction ||--}o Agent : "wasAssociatedWith"
LibraryConstruction ||--}o Attribute : "has attribute"
AmplifiedCdna ||--}o BarcodedCellSample : "wasDerivedFrom"
AmplifiedCdna ||--}o CdnaAmplification : "wasGeneratedBy"
AmplifiedCdna ||--}o Agent : "wasAttributedTo"
AmplifiedCdna ||--}o Attribute : "has attribute"
CdnaAmplification ||--}o BarcodedCellSample : "used"
CdnaAmplification ||--}o AmplifiedCdna : "generated"
CdnaAmplification ||--}o Agent : "wasAssociatedWith"
CdnaAmplification ||--}o Attribute : "has attribute"
BarcodedCellSample ||--}o EnrichedCellSample : "wasDerivedFrom"
BarcodedCellSample ||--}o CellBarcoding : "wasGeneratedBy"
BarcodedCellSample ||--}o Agent : "wasAttributedTo"
BarcodedCellSample ||--}o Attribute : "has attribute"
CellBarcoding ||--}o EnrichedCellSample : "used"
CellBarcoding ||--}o BarcodedCellSample : "generated"
CellBarcoding ||--}o Agent : "wasAssociatedWith"
CellBarcoding ||--}o Attribute : "has attribute"
EnrichedCellSample ||--}o DissociatedCellSample : "wasDerivedFrom"
EnrichedCellSample ||--}o CellEnrichment : "wasGeneratedBy"
EnrichedCellSample ||--}o Agent : "wasAttributedTo"
EnrichedCellSample ||--}o Attribute : "has attribute"
CellEnrichment ||--}o DissociatedCellSample : "used"
CellEnrichment ||--}o EnrichedCellSample : "generated"
CellEnrichment ||--}o Agent : "wasAssociatedWith"
CellEnrichment ||--}o Attribute : "has attribute"
DissociatedCellSample ||--}o TissueSample : "wasDerivedFrom"
DissociatedCellSample ||--}o CellDissociation : "wasGeneratedBy"
DissociatedCellSample ||--}o Agent : "wasAttributedTo"
DissociatedCellSample ||--}o Attribute : "has attribute"
CellDissociation ||--}o TissueSample : "used"
CellDissociation ||--}o DissociatedCellSample : "generated"
CellDissociation ||--}o Agent : "wasAssociatedWith"
CellDissociation ||--}o Attribute : "has attribute"
TissueSample ||--}o BrainSection : "wasDerivedFrom"
TissueSample ||--}o TissueDissecting : "wasGeneratedBy"
TissueSample ||--}o Agent : "wasAttributedTo"
TissueSample ||--}o Attribute : "has attribute"
TissueDissecting ||--}o BrainSection : "used"
TissueDissecting ||--}o TissueSample : "generated"
TissueDissecting ||--}o Agent : "wasAssociatedWith"
TissueDissecting ||--}o Attribute : "has attribute"
BrainSection ||--}o BrainSegment : "wasDerivedFrom"
BrainSection ||--}o BrainSegmentSectioning : "wasGeneratedBy"
BrainSection ||--}o Agent : "wasAttributedTo"
BrainSection ||--}o Attribute : "has attribute"
BrainSegmentSectioning ||--}o BrainSegment : "used"
BrainSegmentSectioning ||--}o BrainSection : "generated"
BrainSegmentSectioning ||--}o Agent : "wasAssociatedWith"
BrainSegmentSectioning ||--}o Attribute : "has attribute"
BrainSegment ||--}o Donor : "wasDerivedFrom"
BrainSegment ||--}o BrainExtraction : "wasGeneratedBy"
BrainSegment ||--}o Agent : "wasAttributedTo"
BrainSegment ||--}o Attribute : "has attribute"
BrainExtraction ||--}o Donor : "used"
BrainExtraction ||--}o BrainSegment : "generated"
BrainExtraction ||--}o Agent : "wasAssociatedWith"
BrainExtraction ||--}o Attribute : "has attribute"
Donor ||--}o OrganismTaxon : "in taxon"
Donor ||--}o Entity : "wasDerivedFrom"
Donor ||--}o Activity : "wasGeneratedBy"
Donor ||--}o Attribute : "has attribute"
Activity ||--}o Attribute : "has attribute"
Entity ||--}o Attribute : "has attribute"
ProvEntity ||--}o Entity : "wasDerivedFrom"
ProvEntity ||--}o Activity : "wasGeneratedBy"
ProvEntity ||--}o Agent : "wasAttributedTo"
Activity ||--}o Attribute : "has attribute"
Entity ||--}o Attribute : "has attribute"
ProvActivity ||--}o Entity : "used"
ProvActivity ||--}o Entity : "generated"
ProvActivity ||--}o Agent : "wasAssociatedWith"
AnnotationCollection ||--}o GeneAnnotation : "annotations"
AnnotationCollection ||--}o GenomeAnnotation : "genome_annotations"
AnnotationCollection ||--}o GenomeAssembly : "genome_assemblies"
Expand Down
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