Skip to content

Commit

Permalink
deploy: 3806d1e
Browse files Browse the repository at this point in the history
  • Loading branch information
puja-trivedi committed Oct 22, 2024
0 parents commit b7f7541
Show file tree
Hide file tree
Showing 174 changed files with 29,198 additions and 0 deletions.
4 changes: 4 additions & 0 deletions .buildinfo
Original file line number Diff line number Diff line change
@@ -0,0 +1,4 @@
# Sphinx build info version 1
# This file records the configuration used when building these files. When it is not found, a full rebuild will be done.
config: acfbbaecd20da8e792384ef7f306c5ac
tags: 645f666f9bcd5a90fca523b33c5a78b7
Binary file added .doctrees/bkbit.cli.doctree
Binary file not shown.
Binary file not shown.
Binary file added .doctrees/bkbit.data_translators.doctree
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file added .doctrees/bkbit.doctree
Binary file not shown.
Binary file added .doctrees/bkbit.model_converters.doctree
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file added .doctrees/bkbit.model_editors.doctree
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file added .doctrees/bkbit.models.doctree
Binary file not shown.
Binary file added .doctrees/bkbit.models.genome_annotation.doctree
Binary file not shown.
Binary file added .doctrees/bkbit.models.library_generation.doctree
Binary file not shown.
Binary file added .doctrees/bkbit.utils.doctree
Binary file not shown.
Binary file added .doctrees/bkbit.utils.get_ncbi_taxonomy.doctree
Binary file not shown.
Binary file added .doctrees/bkbit.utils.load_json.doctree
Binary file not shown.
Binary file added .doctrees/bkbit.utils.nimp_api_endpoints.doctree
Binary file not shown.
Binary file added .doctrees/bkbit.utils.setup_logger.doctree
Binary file not shown.
Binary file added .doctrees/contributing.doctree
Binary file not shown.
Binary file added .doctrees/environment.pickle
Binary file not shown.
Binary file added .doctrees/genome_annotation.doctree
Binary file not shown.
Binary file added .doctrees/index.doctree
Binary file not shown.
Binary file added .doctrees/install.doctree
Binary file not shown.
Binary file added .doctrees/linkml_trimmer.doctree
Binary file not shown.
Binary file added .doctrees/modules.doctree
Binary file not shown.
Binary file added .doctrees/quickstart.doctree
Binary file not shown.
Binary file added .doctrees/specimen_file_manifest.doctree
Binary file not shown.
Binary file added .doctrees/specimen_metadata.doctree
Binary file not shown.
Binary file added .doctrees/spreadsheet_converter.doctree
Binary file not shown.
Empty file added .nojekyll
Empty file.
326 changes: 326 additions & 0 deletions _modules/bkbit/data_translators/anatomical_structure_translator.html

Large diffs are not rendered by default.

1,098 changes: 1,098 additions & 0 deletions _modules/bkbit/data_translators/genome_annotation_translator.html

Large diffs are not rendered by default.

438 changes: 438 additions & 0 deletions _modules/bkbit/model_converters/sheets_converter.html

Large diffs are not rendered by default.

296 changes: 296 additions & 0 deletions _modules/bkbit/model_converters/yaml2sheet_converter.html

Large diffs are not rendered by default.

320 changes: 320 additions & 0 deletions _modules/bkbit/model_editors/linkml_trimmer.html

Large diffs are not rendered by default.

586 changes: 586 additions & 0 deletions _modules/bkbit/models/anatomical_structure.html

Large diffs are not rendered by default.

6,465 changes: 6,465 additions & 0 deletions _modules/bkbit/models/genome_annotation.html

Large diffs are not rendered by default.

318 changes: 318 additions & 0 deletions _modules/bkbit/utils/get_ncbi_taxonomy.html

Large diffs are not rendered by default.

141 changes: 141 additions & 0 deletions _modules/bkbit/utils/load_json.html
Original file line number Diff line number Diff line change
@@ -0,0 +1,141 @@


<!DOCTYPE html>
<html class="writer-html5" lang="en" data-content_root="../../../">
<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>bkbit.utils.load_json &mdash; bkbit documentation</title>
<link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=80d5e7a1" />
<link rel="stylesheet" type="text/css" href="../../../_static/css/theme.css?v=e59714d7" />


<script src="../../../_static/jquery.js?v=5d32c60e"></script>
<script src="../../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
<script src="../../../_static/documentation_options.js?v=5929fcd5"></script>
<script src="../../../_static/doctools.js?v=9bcbadda"></script>
<script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
<script src="../../../_static/js/theme.js"></script>
<link rel="index" title="Index" href="../../../genindex.html" />
<link rel="search" title="Search" href="../../../search.html" />
</head>

<body class="wy-body-for-nav">
<div class="wy-grid-for-nav">
<nav data-toggle="wy-nav-shift" class="wy-nav-side">
<div class="wy-side-scroll">
<div class="wy-side-nav-search" >



<a href="../../../index.html" class="icon icon-home">
bkbit
</a>
<div role="search">
<form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
<input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
<input type="hidden" name="check_keywords" value="yes" />
<input type="hidden" name="area" value="default" />
</form>
</div>
</div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
<p class="caption" role="heading"><span class="caption-text">GETTING STARTED</span></p>
<ul>
<li class="toctree-l1"><a class="reference internal" href="../../../install.html">Installation</a></li>
</ul>
<p class="caption" role="heading"><span class="caption-text">DATA TRANSLATORS</span></p>
<ul>
<li class="toctree-l1"><a class="reference internal" href="../../../specimen_file_manifest.html">Specimen File Manifest</a></li>
<li class="toctree-l1"><a class="reference internal" href="../../../specimen_metadata.html">Specimen Metadata</a></li>
<li class="toctree-l1"><a class="reference internal" href="../../../genome_annotation.html">Annotated Genome Data</a></li>
</ul>
<p class="caption" role="heading"><span class="caption-text">MODEL CONVERTERS</span></p>
<ul>
<li class="toctree-l1"><a class="reference internal" href="../../../spreadsheet_converter.html">Spreadsheet to LinkML Schema</a></li>
</ul>
<p class="caption" role="heading"><span class="caption-text">MODEL EDITORS</span></p>
<ul>
<li class="toctree-l1"><a class="reference internal" href="../../../linkml_trimmer.html">LinkML Schema Trimmer</a></li>
</ul>
<p class="caption" role="heading"><span class="caption-text">REFERENCE</span></p>
<ul>
<li class="toctree-l1"><a class="reference internal" href="../../../modules.html">bkbit</a></li>
</ul>

</div>
</div>
</nav>

<section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
<i data-toggle="wy-nav-top" class="fa fa-bars"></i>
<a href="../../../index.html">bkbit</a>
</nav>

<div class="wy-nav-content">
<div class="rst-content">
<div role="navigation" aria-label="Page navigation">
<ul class="wy-breadcrumbs">
<li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
<li class="breadcrumb-item"><a href="../../index.html">Module code</a></li>
<li class="breadcrumb-item active">bkbit.utils.load_json</li>
<li class="wy-breadcrumbs-aside">
</li>
</ul>
<hr/>
</div>
<div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
<div itemprop="articleBody">

<h1>Source code for bkbit.utils.load_json</h1><div class="highlight"><pre>
<span></span><span class="kn">import</span> <span class="nn">json</span>

<div class="viewcode-block" id="load_json">
<a class="viewcode-back" href="../../../bkbit.utils.load_json.html#bkbit.utils.load_json.load_json">[docs]</a>
<span class="k">def</span> <span class="nf">load_json</span><span class="p">(</span><span class="n">file_path</span><span class="p">):</span>
<span class="w"> </span><span class="sd">&quot;&quot;&quot;</span>
<span class="sd"> Load a JSON file from the given file path.</span>

<span class="sd"> Args:</span>
<span class="sd"> file_path (str): The path to the JSON file.</span>

<span class="sd"> Returns:</span>
<span class="sd"> dict: The contents of the JSON file as a dictionary.</span>

<span class="sd"> Raises:</span>
<span class="sd"> FileNotFoundError: If the file does not exist.</span>
<span class="sd"> JSONDecodeError: If the file is not a valid JSON.</span>

<span class="sd"> &quot;&quot;&quot;</span>
<span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">file_path</span><span class="p">,</span> <span class="s2">&quot;r&quot;</span><span class="p">,</span> <span class="n">encoding</span><span class="o">=</span><span class="s2">&quot;utf-8&quot;</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
<span class="k">return</span> <span class="n">json</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">f</span><span class="p">)</span></div>

</pre></div>

</div>
</div>
<footer>

<hr/>

<div role="contentinfo">
<p>&#169; Copyright 2024, BICAN.</p>
</div>

Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
<a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
provided by <a href="https://readthedocs.org">Read the Docs</a>.


</footer>
</div>
</div>
</section>
</div>
<script>
jQuery(function () {
SphinxRtdTheme.Navigation.enable(true);
});
</script>

</body>
</html>
Loading

0 comments on commit b7f7541

Please sign in to comment.