Use xarray.open_mfdataset with better options #765
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| # This workflow will install Python dependencies, run tests and lint with a variety of Python versions | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: Python package | |
| on: | |
| push: | |
| branches-ignore: | |
| - master | |
| pull_request: | |
| concurrency: | |
| group: ${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| pytest: | |
| runs-on: ubuntu-latest | |
| if: always() | |
| strategy: | |
| matrix: | |
| python-version: [3.8, 3.9, '3.10', 3.x] | |
| pip-packages: | |
| - "setuptools pip pytest pytest-cov coverage codecov boutdata xarray numpy>=1.16.0" | |
| fail-fast: false | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v1 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| sudo apt-get update && sudo apt-get install libhdf5-dev libnetcdf-dev | |
| python -m pip install --upgrade pip | |
| pip install --upgrade ${{ matrix.pip-packages }} | |
| pip install -e . | |
| - name: Test with pytest | |
| run: | | |
| pip install pytest | |
| pytest -v --long --cov | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v1 | |
| pytest-min-versions: | |
| runs-on: ubuntu-latest | |
| if: always() | |
| strategy: | |
| matrix: | |
| python-version: [3.8] | |
| pip-packages: | |
| - "setuptools pip pytest pytest-cov coverage codecov boutdata==0.1.4 xarray==0.18.0 dask==2.10.0 numpy==1.18.0 natsort==5.5.0 matplotlib==3.1.1 animatplot==0.4.2 netcdf4==1.4.2 Pillow==7.2.0" # test with oldest supported version of packages. Note, using numpy==1.18.0 as a workaround because numpy==1.17.0 is not supported on Python-3.7, even though we should currently support numpy==1.17.0. | |
| fail-fast: false | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v1 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| sudo apt-get update && sudo apt-get install libhdf5-dev libnetcdf-dev | |
| python -m pip install --upgrade pip | |
| pip install --upgrade ${{ matrix.pip-packages }} | |
| pip install -e . | |
| - name: Test with pytest | |
| run: | | |
| pip install pytest | |
| pytest -v --long --cov | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v1 | |
| # Need to tidy up the things that flake8 finds before we activate this | |
| #flake8: | |
| # runs-on: ubuntu-latest | |
| # if: always() | |
| # steps: | |
| # - uses: actions/checkout@v2 | |
| # - name: Set up Python | |
| # uses: actions/setup-python@v1 | |
| # - name: Install dependencies | |
| # run: | | |
| # python -m pip install --upgrade pip | |
| # - name: Lint with flake8 | |
| # run: | | |
| # pip install flake8 | |
| # flake8 | |
| black: | |
| runs-on: ubuntu-latest | |
| if: always() | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python | |
| uses: actions/setup-python@v1 | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| - name: Check formatting with black | |
| run: | | |
| pip install black | |
| black --check . |