Merge pull request #1575 from borglab/hybrid-tablefactor-2

gtsam/discrete/DecisionTree-inl.h

@@ -93,7 +93,8 @@ namespace gtsam {
     /// print
     void print(const std::string& s, const LabelFormatter& labelFormatter,
                const ValueFormatter& valueFormatter) const override {
-      std::cout << s << " Leaf " << valueFormatter(constant_) << std::endl;
+      std::cout << s << " Leaf [" << nrAssignments() << "] "
+                << valueFormatter(constant_) << std::endl;
     }
 
     /** Write graphviz format to stream `os`. */
@@ -827,6 +828,16 @@ namespace gtsam {
     return total;
   }
 
+  /****************************************************************************/
+  template <typename L, typename Y>
+  size_t DecisionTree<L, Y>::nrAssignments() const {
+    size_t n = 0;
+    this->visitLeaf([&n](const DecisionTree<L, Y>::Leaf& leaf) {
+      n += leaf.nrAssignments();
+    });
+    return n;
+  }
+
   /****************************************************************************/
   // fold is just done with a visit
   template <typename L, typename Y>

gtsam/discrete/DecisionTree.h

@@ -320,6 +320,42 @@ namespace gtsam {
     /// Return the number of leaves in the tree.
     size_t nrLeaves() const;
 
+    /**
+     * @brief This is a convenience function which returns the total number of
+     * leaf assignments in the decision tree.
+     * This function is not used for anymajor operations within the discrete
+     * factor graph framework.
+     *
+     * Leaf assignments represent the cardinality of each leaf node, e.g. in a
+     * binary tree each leaf has 2 assignments. This includes counts removed
+     * from implicit pruning hence, it will always be >= nrLeaves().
+     *
+     * E.g. we have a decision tree as below, where each node has 2 branches:
+     *
+     * Choice(m1)
+     * 0 Choice(m0)
+     * 0 0 Leaf 0.0
+     * 0 1 Leaf 0.0
+     * 1 Choice(m0)
+     * 1 0 Leaf 1.0
+     * 1 1 Leaf 2.0
+     *
+     * In the unpruned form, the tree will have 4 assignments, 2 for each key,
+     * and 4 leaves.
+     *
+     * In the pruned form, the number of assignments is still 4 but the number
+     * of leaves is now 3, as below:
+     *
+     * Choice(m1)
+     * 0 Leaf 0.0
+     * 1 Choice(m0)
+     * 1 0 Leaf 1.0
+     * 1 1 Leaf 2.0
+     *
+     * @return size_t
+     */
+    size_t nrAssignments() const;
+
     /**
      * @brief Fold a binary function over the tree, returning accumulator.
      *

gtsam/discrete/DecisionTreeFactor.cpp

@@ -101,6 +101,14 @@ namespace gtsam {
     return DecisionTreeFactor(keys, result);
   }
 
+  /* ************************************************************************ */
+  DecisionTreeFactor DecisionTreeFactor::apply(ADT::UnaryAssignment op) const {
+    // apply operand
+    ADT result = ADT::apply(op);
+    // Make a new factor
+    return DecisionTreeFactor(discreteKeys(), result);
+  }
+
   /* ************************************************************************ */
   DecisionTreeFactor::shared_ptr DecisionTreeFactor::combine(
       size_t nrFrontals, ADT::Binary op) const {

gtsam/discrete/DecisionTreeFactor.h

@@ -182,6 +182,12 @@ namespace gtsam {
     /// @name Advanced Interface
     /// @{
 
+    /**
+     * Apply unary operator (*this) "op" f
+     * @param op a unary operator that operates on AlgebraicDecisionTree
+     */
+    DecisionTreeFactor apply(ADT::UnaryAssignment op) const;
+
     /**
      * Apply binary operator (*this) "op" f
      * @param f the second argument for op

gtsam/discrete/tests/testDecisionTree.cpp

@@ -25,6 +25,7 @@
 #include <gtsam/base/serializationTestHelpers.h>
 #include <gtsam/discrete/DecisionTree-inl.h>
 #include <gtsam/discrete/Signature.h>
+#include <gtsam/inference/Symbol.h>
 
 #include <iomanip>
 

gtsam/hybrid/HybridBayesNet.cpp

@@ -37,24 +37,6 @@ bool HybridBayesNet::equals(const This &bn, double tol) const {
   return Base::equals(bn, tol);
 }
 
-/* ************************************************************************* */
-DecisionTreeFactor::shared_ptr HybridBayesNet::discreteConditionals() const {
-  AlgebraicDecisionTree<Key> discreteProbs;
-
-  // The canonical decision tree factor which will get
-  // the discrete conditionals added to it.
-  DecisionTreeFactor discreteProbsFactor;
-
-  for (auto &&conditional : *this) {
-    if (conditional->isDiscrete()) {
-      // Convert to a DecisionTreeFactor and add it to the main factor.
-      DecisionTreeFactor f(*conditional->asDiscrete());
-      discreteProbsFactor = discreteProbsFactor * f;
-    }
-  }
-  return std::make_shared<DecisionTreeFactor>(discreteProbsFactor);
-}
-
 /* ************************************************************************* */
 /**
  * @brief Helper function to get the pruner functional.
@@ -144,53 +126,52 @@ std::function<double(const Assignment<Key> &, double)> prunerFunc(
 }
 
 /* ************************************************************************* */
-void HybridBayesNet::updateDiscreteConditionals(
-    const DecisionTreeFactor &prunedDiscreteProbs) {
-  KeyVector prunedTreeKeys = prunedDiscreteProbs.keys();
+DecisionTreeFactor HybridBayesNet::pruneDiscreteConditionals(
+    size_t maxNrLeaves) {
+  // Get the joint distribution of only the discrete keys
+  gttic_(HybridBayesNet_PruneDiscreteConditionals);
+  // The joint discrete probability.
+  DiscreteConditional discreteProbs;
+
+  std::vector<size_t> discrete_factor_idxs;
+  // Record frontal keys so we can maintain ordering
+  Ordering discrete_frontals;
 
-  // Loop with index since we need it later.
   for (size_t i = 0; i < this->size(); i++) {
-    HybridConditional::shared_ptr conditional = this->at(i);
+    auto conditional = this->at(i);
     if (conditional->isDiscrete()) {
-      auto discrete = conditional->asDiscrete();
-
-      // Convert pointer from conditional to factor
-      auto discreteTree =
-          std::dynamic_pointer_cast<DecisionTreeFactor::ADT>(discrete);
-      // Apply prunerFunc to the underlying AlgebraicDecisionTree
-      DecisionTreeFactor::ADT prunedDiscreteTree =
-          discreteTree->apply(prunerFunc(prunedDiscreteProbs, *conditional));
-
-      gttic_(HybridBayesNet_MakeConditional);
-      // Create the new (hybrid) conditional
-      KeyVector frontals(discrete->frontals().begin(),
-                         discrete->frontals().end());
-      auto prunedDiscrete = std::make_shared<DiscreteLookupTable>(
-          frontals.size(), conditional->discreteKeys(), prunedDiscreteTree);
-      conditional = std::make_shared<HybridConditional>(prunedDiscrete);
-      gttoc_(HybridBayesNet_MakeConditional);
-
-      // Add it back to the BayesNet
-      this->at(i) = conditional;
+      discreteProbs = discreteProbs * (*conditional->asDiscrete());
+
+      Ordering conditional_keys(conditional->frontals());
+      discrete_frontals += conditional_keys;
+      discrete_factor_idxs.push_back(i);
     }
   }
-}
-
-/* ************************************************************************* */
-HybridBayesNet HybridBayesNet::prune(size_t maxNrLeaves) {
-  // Get the decision tree of only the discrete keys
-  gttic_(HybridBayesNet_PruneDiscreteConditionals);
-  DecisionTreeFactor::shared_ptr discreteConditionals =
-      this->discreteConditionals();
   const DecisionTreeFactor prunedDiscreteProbs =
-      discreteConditionals->prune(maxNrLeaves);
+      discreteProbs.prune(maxNrLeaves);
   gttoc_(HybridBayesNet_PruneDiscreteConditionals);
 
+  // Eliminate joint probability back into conditionals
   gttic_(HybridBayesNet_UpdateDiscreteConditionals);
-  this->updateDiscreteConditionals(prunedDiscreteProbs);
+  DiscreteFactorGraph dfg{prunedDiscreteProbs};
+  DiscreteBayesNet::shared_ptr dbn = dfg.eliminateSequential(discrete_frontals);
+
+  // Assign pruned discrete conditionals back at the correct indices.
+  for (size_t i = 0; i < discrete_factor_idxs.size(); i++) {
+    size_t idx = discrete_factor_idxs.at(i);
+    this->at(idx) = std::make_shared<HybridConditional>(dbn->at(i));
+  }
   gttoc_(HybridBayesNet_UpdateDiscreteConditionals);
 
-  /* To Prune, we visitWith every leaf in the GaussianMixture.
+  return prunedDiscreteProbs;
+}
+
+/* ************************************************************************* */
+HybridBayesNet HybridBayesNet::prune(size_t maxNrLeaves) {
+  DecisionTreeFactor prunedDiscreteProbs =
+      this->pruneDiscreteConditionals(maxNrLeaves);
+
+  /* To prune, we visitWith every leaf in the GaussianMixture.
    * For each leaf, using the assignment we can check the discrete decision tree
    * for 0.0 probability, then just set the leaf to a nullptr.
    *

gtsam/hybrid/HybridBayesNet.h

@@ -136,13 +136,6 @@ class GTSAM_EXPORT HybridBayesNet : public BayesNet<HybridConditional> {
    */
   VectorValues optimize(const DiscreteValues &assignment) const;
 
-  /**
-   * @brief Get all the discrete conditionals as a decision tree factor.
-   *
-   * @return DecisionTreeFactor::shared_ptr
-   */
-  DecisionTreeFactor::shared_ptr discreteConditionals() const;
-
   /**
    * @brief Sample from an incomplete BayesNet, given missing variables.
    *
@@ -222,11 +215,11 @@ class GTSAM_EXPORT HybridBayesNet : public BayesNet<HybridConditional> {
 
  private:
   /**
-   * @brief Update the discrete conditionals with the pruned versions.
+   * @brief Prune all the discrete conditionals.
    *
-   * @param prunedDiscreteProbs
+   * @param maxNrLeaves
    */
-  void updateDiscreteConditionals(const DecisionTreeFactor &prunedDiscreteProbs);
+  DecisionTreeFactor pruneDiscreteConditionals(size_t maxNrLeaves);
 
 #ifdef GTSAM_ENABLE_BOOST_SERIALIZATION
   /** Serialization function */

gtsam/hybrid/HybridFactor.h

@@ -20,6 +20,7 @@
 #include <gtsam/base/Testable.h>
 #include <gtsam/discrete/DecisionTree.h>
 #include <gtsam/discrete/DiscreteKey.h>
+#include <gtsam/discrete/TableFactor.h>
 #include <gtsam/inference/Factor.h>
 #include <gtsam/linear/GaussianFactorGraph.h>
 #include <gtsam/nonlinear/Values.h>

gtsam/hybrid/HybridFactorGraph.cpp

@@ -17,7 +17,6 @@
  * @date   January, 2023
  */
 
-#include <gtsam/discrete/DecisionTreeFactor.h>
 #include <gtsam/hybrid/HybridFactorGraph.h>
 
 namespace gtsam {
@@ -26,7 +25,7 @@ namespace gtsam {
 std::set<DiscreteKey> HybridFactorGraph::discreteKeys() const {
   std::set<DiscreteKey> keys;
   for (auto& factor : factors_) {
-    if (auto p = std::dynamic_pointer_cast<DecisionTreeFactor>(factor)) {
+    if (auto p = std::dynamic_pointer_cast<DiscreteFactor>(factor)) {
       for (const DiscreteKey& key : p->discreteKeys()) {
         keys.insert(key);
       }
@@ -67,6 +66,8 @@ const KeySet HybridFactorGraph::continuousKeySet() const {
       for (const Key& key : p->continuousKeys()) {
         keys.insert(key);
       }
+    } else if (auto p = std::dynamic_pointer_cast<GaussianFactor>(factor)) {
+      keys.insert(p->keys().begin(), p->keys().end());
     }
   }
   return keys;