setup.py -> pyproject

MANIFEST.in

@@ -1,6 +1,5 @@
 include README.rst
 include CHANGES.rst
-include setup.cfg
 include LICENSE.rst
 include pyproject.toml
 

pyproject.toml

@@ -1,7 +1,100 @@
 [build-system]
+requires = [
+  "setuptools",
+  "setuptools_scm[toml]",
+  "wheel"
+]
+build-backend = "setuptools.build_meta"
 
-requires = ["setuptools",
-            "setuptools_scm",
-            "wheel"]
+[project]
+name = "gadfly"
+description = "tellar oscillations and granulation"
+requires-python = ">=3.11"
+readme = { file = "README.rst", content-type = "text/x-rst" }
+license = { file = "licenses/LICENSE.rst", content-type = "text/plain" }
+authors = [
+  { name = "Brett M. Morris", email = "[email protected]" },
+]
+dependencies = [
+    "numpy",
+    "celerite2",
+    "astropy",
+    "matplotlib",
+    "PyYAML",
+    "scipy",
+    "lightkurve",
+    "tynt",
+]
+dynamic = ["version"]
 
-build-backend = 'setuptools.build_meta'
+[project.optional-dependencies]
+test = [
+    "pytest",
+    "pytest-doctestplus",
+    "pytest-cov",
+    "scipy",
+]
+docs = [
+    "sphinx",
+    "sphinx-automodapi",
+    "scipy",
+    "lightkurve",
+    "sphinx-book-theme>=0.3.3",
+    "numpydoc",
+]
+
+[project.urls]
+repository = "https://github.com/bmorris3/gadfly"
+
+[tool.setuptools]
+zip-safe = false
+include-package-data = true
+
+[tool.setuptools.packages.find]
+
+[tool.setuptools_scm]
+write_to = "gadfly/version.py"
+
+[tool.pytest.ini_options]
+testpaths = "gadfly"
+#filterwarnings = [
+#]
+
+[tool.coverage.run]
+omit = [
+ "gadfly/__init*",
+ "gadfly/conftest.py",
+ "gadfly/*setup_package*",
+ "gadfly/tests/*",
+ "gadfly/*/tests/*",
+ "gadfly/extern/*",
+ "gadfly/version*",
+ "*/gadfly/__init*",
+ "*/gadfly/conftest.py",
+ "*/gadfly/*setup_package*",
+ "*/gadfly/tests/*",
+ "*/gadfly/*/tests/*",
+ "*/gadfly/extern/*",
+ "*/gadfly/version*",
+]
+
+[tool.coverage.report]
+exclude_lines = [
+  # Have to re-enable the standard pragma
+  "pragma: no cover",
+  # Don't complain about packages we have installed
+  "except ImportError",
+  # Don't complain if tests don't hit assertions
+  "raise AssertionError",
+  "raise NotImplementedError",
+  # Don't complain about script hooks
+  "def main(.*):",
+  # Ignore branches that don't pertain to this version of Python
+  "pragma: py{ignore_python_version}",
+  # Don't complain about IPython completion helper
+  "def _ipython_key_completions_",
+  # typing.TYPE_CHECKING is False at runtime
+  "if TYPE_CHECKING:",
+  # Ignore typing overloads
+  "@overload",
+]

setup.py

@@ -1,24 +1,4 @@
 #!/usr/bin/env python
-# Licensed under a 3-clause BSD style license - see LICENSE.rst
-
-import os
-
 from setuptools import setup
 
-
-VERSION_TEMPLATE = """
-# Note that we need to fall back to the hard-coded version if either
-# setuptools_scm can't be imported or setuptools_scm can't determine the
-# version, so we catch the generic 'Exception'.
-try:
-    from setuptools_scm import get_version
-    __version__ = get_version(root='..', relative_to=__file__)
-except Exception:
-    __version__ = '{version}'
-""".lstrip()
-
-setup(
-    use_scm_version={'write_to': os.path.join('gadfly', 'version.py'),
-                     'write_to_template': VERSION_TEMPLATE},
-
-)
+setup()

tox.ini

@@ -36,9 +36,11 @@ deps =
     devdeps: git+https://github.com/exoplanet-dev/celerite2#egg=celerite2
 
     numpy
-    astropy
     celerite2
+    astropy
     matplotlib
+    PyYAML
+    scipy
     lightkurve
     tynt
 
@@ -49,7 +51,7 @@ extras =
 
 commands =
     pip freeze
-    pytest --pyargs gadfly {toxinidir}/docs --cov gadfly --cov-config={toxinidir}/setup.cfg {posargs}
+    pytest --pyargs gadfly {toxinidir}/docs --cov gadfly --cov-config={toxinidir}/pyproject.toml {posargs}
 
 [testenv:build_docs]
 changedir = docs