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Release 2.1.0
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@rhpvorderman rhpvorderman released this 02 Dec 13:44
· 1329 commits to develop since this release
v2.1.0
5b52c19
  • Make intervals optional for GATK CombineGVCFs
  • Updated biowdl-input-converter version.
  • GATK CombineGVCFs memory was tripled to prevent it from using a lot of CPU in
    Garbage Collection mode.
  • Updated parameter_meta sections for Minimap2 and TranscriptClean to wdl-aid format.
  • Updated cores variable for TALON, the default is now 4.
  • Updated TALON to version 4.4.
  • Added parameter_meta sections to the following tools:
    • htseq
    • cutadapt
    • collect-columns
    • stringtie
    • fastqc
  • Updated star default image to 2.7.3a.
  • Hisat2 now indexes the resulting BAM file.
  • Samtools index now also works without setting a path for the output.
  • Bugfix: Biowdl-input-converter now makes sure the output directory exists.
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