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test: isolated tests of functionality #956

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test: isolated tests of functionality #956

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@daler daler commented Feb 20, 2024

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@daler
initial migration of container infra from bioconda-containers
172ffa5
@daler
first draft of build script
40cee01
@daler
rename/reorganize
d68171b
@daler
parameterize busybox image to copy from
acb1d84
@daler
git checkout parameterized branch
988ee01
@daler
parameterize busybox image
a4801a5
@daler
depend on passed-in conda/mamba versions
de2635b
@daler
first round of refactoring build-images.yml
5a00ef3
@daler
move generic build to top, and adjust workflow
8fb2257
@daler
split out base-debian into an independent job
e9864ba
@daler
factor out archs
9ffeda8
@daler
add build-env and create-env
c7ac9b1
@daler
try using branch name for now
8ffc3ea
@daler
fix path
a971e5d
@daler
rm redundant if clause
976f350
@daler
parameterize create-env test to use local images
5d3acc7
@daler
check for existing tags
e368e39
@daler
allow missing repository on quay.io if configured
bbbd9d3
@daler
add ARG for next FROM context
36d2fc6
@daler
add build script for local testing (may be moved later)
03c2472
@daler
add docs
b7a6f4a
@daler
parameterize archs
3ff8d68
@daler
rm manifests by default before building locally
b580a38
@daler
add switches to build each container
cfd7b85
@daler
fix arg
073c3df
@daler
use python (which will come from conda-forge)
33e6ff4 
rather than bioconda package, which is not yet built for arm
@daler
improve comments in build.sh
0475a92
@daler
warn -> error
fd21947
@daler
move test build-args closer to actual test
7399905
@daler
clean up buildah inspect output
be2b3f0
@daler
don't use "localhost" as registry for docker
26325e9
@daler
registry includes the slash
ec3704c
@daler
convert back to steps rather than jobs
56b1fe2 
because containers can't (easily) be passed between jobs
@daler
need to podman push images to docker-daemon so docker can use
81aca27
@daler
update build.sh for local tests
15c1954
@daler
comments and cleanup
01122df
@daler
tags need bioconda-utils version
bd90014
@daler
use correct output
7d6f5c8
@daler
attempt pushing to docker-daemon
7ce9bd1
@daler
disable some jobs so we can do some container pushing tests
8b7b1ff
@daler
try pushing to ghcr.io
dc4514a
@daler
rm push to docker daemon
6a177d2
@daler
login to ghcr
3188ea3
@daler
test pull from ghcr
39ab36a
@daler
yaml syntax
93cb439
@daler
try building everything and pushing/pulling to/from ghcr.io
ce45345
@daler
re-enable build-others job
9967d44
@daler
get bioconda-utils version from step output
c4554f7
@daler
get bioconda-utils version from build-other job
73aef1c
@daler
aaaand use right output
2ce4b8c
@daler
push the right image
c5eb650
@daler
add additional label to tie to bioconda-utils
f45e2ff
@daler
fix label
e9c6b7f
@daler
new version number to see if ghcr will make public
c8cb13e
@daler
ensure all tags are pulled
e291d36
@daler
stripped down yml for testing isolated functionality
94023e6
@daler
echo
ffea552
@daler
fix
ecd7893
@daler
fix
f972684
@daler
fix
b6404e8
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@daler