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linux-aarch64 build for abundancebin #46341

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Describe your pull request here


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@rpetit3 rpetit3 added the aarch64 Related to adding linux-aarch64 support label Mar 12, 2024
@martin-g
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martin-g commented Mar 13, 2024

Error:

13:41:23 �[32mBIOCONDA INFO�[0m (OUT) abundancebin: /lib64/libstdc++.so.6: version `CXXABI_1.3.9' not found (required by abundancebin)�[0m
13:41:23 �[32mBIOCONDA INFO�[0m (OUT) abundancebin: /lib64/libstdc++.so.6: version `GLIBCXX_3.4.21' not found (required by abundancebin)�[0m

Current state:

❯ docker run -it --rm quay.io/bioconda/bioconda-utils-build-env-cos7-aarch64 bash
[conda@87a029d4266f ~]$ strings /lib64/libstdc++.so.6 | grep 'CXXABI'
CXXABI_1.3
CXXABI_1.3.1
CXXABI_1.3.2
CXXABI_1.3.3
CXXABI_1.3.4
CXXABI_1.3.5
CXXABI_1.3.6
CXXABI_1.3.7
CXXABI_TM_1
[conda@87a029d4266f ~]$ strings /lib64/libstdc++.so.6 | grep 'GLIBCXX_'
GLIBCXX_3.4
GLIBCXX_3.4.1
GLIBCXX_3.4.2
GLIBCXX_3.4.3
GLIBCXX_3.4.4
GLIBCXX_3.4.5
GLIBCXX_3.4.6
GLIBCXX_3.4.7
GLIBCXX_3.4.8
GLIBCXX_3.4.9
GLIBCXX_3.4.10
GLIBCXX_3.4.11
GLIBCXX_3.4.12
GLIBCXX_3.4.13
GLIBCXX_3.4.14
GLIBCXX_3.4.15
GLIBCXX_3.4.16
GLIBCXX_3.4.17
GLIBCXX_3.4.18
GLIBCXX_3.4.19
GLIBCXX_DEBUG_MESSAGE_LENGTH

See #46186 (comment) for more info and https://github.com/bioconda/bioconda-recipes/pull/46185/files for example how to exclude testing on linux-aarch64

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