skiplist build failures

bioconda · Aug 27, 2024 · d7d08b6 · d7d08b6
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diff --git a/recipes/ucsc-bedtogenepred/build_failure.linux-aarch64.yaml b/recipes/ucsc-bedtogenepred/build_failure.linux-aarch64.yaml
@@ -1,5 +1,5 @@
 recipe_sha: 7b21fbfc01389ad51ea94e90ff1839e15eaeaf72a508a793e483b83ff9cf7b1c  # The hash of the recipe's meta.yaml at which this recipe failed to build.
-skiplist: false # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
+skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
 log: |-
   $BUILD_PREFIX/bin/aarch64-conda-linux-gnu-cc -O -g -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/ucsc-bedtogenepred-469 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -O3 -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--allow-shlib-undefined -Wl,-rpath,$PREFIX/lib -Wl,-rpath-link,$PREFIX/lib -L$PREFIX/lib -L$PREFIX/lib    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_aarch64 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../../htslib -I$PREFIX/include -I$BUILD_PREFIX/include -I$PREFIX/include/libpng16 -I$PREFIX/include -o sage.o -c sage.c
   $BUILD_PREFIX/bin/aarch64-conda-linux-gnu-cc -O -g -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/ucsc-bedtogenepred-469 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -O3 -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--allow-shlib-undefined -Wl,-rpath,$PREFIX/lib -Wl,-rpath-link,$PREFIX/lib -L$PREFIX/lib -L$PREFIX/lib    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_aarch64 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../../htslib -I$PREFIX/include -I$BUILD_PREFIX/include -I$PREFIX/include/libpng16 -I$PREFIX/include -o sageCounts.o -c sageCounts.c

diff --git a/recipes/ucsc-genepredtogtf/build_failure.linux-aarch64.yaml b/recipes/ucsc-genepredtogtf/build_failure.linux-aarch64.yaml
@@ -1,5 +1,5 @@
 recipe_sha: ed90f8c081a320efcceaf8243e85ebb44a192fcf6bf968b5e8e6e34e61630b4e  # The hash of the recipe's meta.yaml at which this recipe failed to build.
-skiplist: false # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
+skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
 log: |-
   $BUILD_PREFIX/bin/aarch64-conda-linux-gnu-cc -O -g -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/ucsc-genepredtogtf-469 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -O3 -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--allow-shlib-undefined -Wl,-rpath,$PREFIX/lib -Wl,-rpath-link,$PREFIX/lib -L$PREFIX/lib -L$PREFIX/lib    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_aarch64 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../../htslib -I$PREFIX/include -I$BUILD_PREFIX/include -I$PREFIX/include/libpng16 -I$PREFIX/include -o sage.o -c sage.c
   $BUILD_PREFIX/bin/aarch64-conda-linux-gnu-cc -O -g -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/ucsc-genepredtogtf-469 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -O3 -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--allow-shlib-undefined -Wl,-rpath,$PREFIX/lib -Wl,-rpath-link,$PREFIX/lib -L$PREFIX/lib -L$PREFIX/lib    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_aarch64 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../../htslib -I$PREFIX/include -I$BUILD_PREFIX/include -I$PREFIX/include/libpng16 -I$PREFIX/include -o sageCounts.o -c sageCounts.c

diff --git a/recipes/ucsc-hggcpercent/build_failure.linux-aarch64.yaml b/recipes/ucsc-hggcpercent/build_failure.linux-aarch64.yaml
@@ -1,5 +1,5 @@
 recipe_sha: 9d27f1c59b89178fde1353bc725a3808689b650f288da404f9c799eae1ae3a0d  # The hash of the recipe's meta.yaml at which this recipe failed to build.
-skiplist: false # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
+skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
 log: |-
   $BUILD_PREFIX/bin/aarch64-conda-linux-gnu-cc -O -g -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/ucsc-hggcpercent-469 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -O3 -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--allow-shlib-undefined -Wl,-rpath,$PREFIX/lib -Wl,-rpath-link,$PREFIX/lib -L$PREFIX/lib -L$PREFIX/lib    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_aarch64 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../../htslib -I$PREFIX/include -I$BUILD_PREFIX/include -I$PREFIX/include/libpng16 -I$PREFIX/include -o sqlProg.o -c sqlProg.c
   $BUILD_PREFIX/bin/aarch64-conda-linux-gnu-cc -O -g -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/ucsc-hggcpercent-469 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -O3 -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--allow-shlib-undefined -Wl,-rpath,$PREFIX/lib -Wl,-rpath-link,$PREFIX/lib -L$PREFIX/lib -L$PREFIX/lib    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_aarch64 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../../htslib -I$PREFIX/include -I$BUILD_PREFIX/include -I$PREFIX/include/libpng16 -I$PREFIX/include -o sqlSanity.o -c sqlSanity.c

diff --git a/recipes/ucsc-liftover/build_failure.linux-aarch64.yaml b/recipes/ucsc-liftover/build_failure.linux-aarch64.yaml
@@ -1,5 +1,5 @@
 recipe_sha: bfa666d0b2512b84717067317854464bd3ae955f9161d0af61c7088471c90162  # The hash of the recipe's meta.yaml at which this recipe failed to build.
-skiplist: false # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
+skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
 log: |-
   $BUILD_PREFIX/bin/aarch64-conda-linux-gnu-cc -O -g -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/ucsc-liftover-469 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -O3 -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--allow-shlib-undefined -Wl,-rpath,$PREFIX/lib -Wl,-rpath-link,$PREFIX/lib -L$PREFIX/lib -L$PREFIX/lib    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_aarch64 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../../htslib -I$PREFIX/include -I$BUILD_PREFIX/include -I$PREFIX/include/libpng16 -I$PREFIX/include -o sample.o -c sample.c
   $BUILD_PREFIX/bin/aarch64-conda-linux-gnu-cc -O -g -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/ucsc-liftover-469 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -O3 -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--allow-shlib-undefined -Wl,-rpath,$PREFIX/lib -Wl,-rpath-link,$PREFIX/lib -L$PREFIX/lib -L$PREFIX/lib    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_aarch64 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../../htslib -I$PREFIX/include -I$BUILD_PREFIX/include -I$PREFIX/include/libpng16 -I$PREFIX/include -o sanger22extra.o -c sanger22extra.c