TST: Add GitHub action testing (#24)

* TST: Create unit-tests.yml

* TST: try explicit version

* TST: Remove unnecessary setup python

* TST: disable precommit tests

* TST: typo

* TST: add pre-commit tests

* TST: try installing jupyter for pre-commit

* TST: add install/import tests

* TST: just install basic version

* TST: typo fixes

* TST: done run executable tests on windows

* TST: another attempt to disable executable tests for windows

* TST: remove executable tests

* DOC: add documentation job

* DOC: make sure to pull tags for docs job

* BLD: upload docs as an artifact

.github/workflows/basic-install.yml

@@ -0,0 +1,47 @@
+name: Clean install
+
+on:
+  push:
+    branches: [ "github-main" ]
+  pull_request:
+    branches: [ "github-main" ]
+
+jobs:
+  build:
+
+    runs-on: ${{ matrix.os }}
+    strategy:
+      matrix:
+        os: [ubuntu-latest, macos-latest, windows-latest]
+        python-version: ["3.9", "3.10", "3.11"]
+    steps:
+      - uses: actions/checkout@v4
+      - name: Set up Python ${{ matrix.python-version }}
+        uses: actions/setup-python@v4
+        with:
+          python-version: ${{ matrix.python-version }}
+      - name: Install
+        run: python -m pip install .
+      - name: List environment
+        run: python -m pip list installed
+      - name: Test imports
+        run: |
+          python -c "import bilby"
+          python -c "import bilby.bilby_mcmc"
+          python -c "import bilby.core"
+          python -c "import bilby.core.prior"
+          python -c "import bilby.core.sampler"
+          python -c "import bilby.core.utils"
+          python -c "import bilby.gw"
+          python -c "import bilby.gw.detector"
+          python -c "import bilby.gw.eos"
+          python -c "import bilby.gw.likelihood"
+          python -c "import bilby.gw.sampler"
+          python -c "import bilby.hyper"
+          python -c "import cli_bilby"
+          python test/import_test.py
+      # - if: ${{ matrix.os != "windows-latest" }}
+      #   run: |
+      #     for script in $(pip show -f bilby | grep "bin\/" | xargs -I {} basename {}); do
+      #         ${script} --help;
+      #     done

.github/workflows/pages.yml

@@ -0,0 +1,46 @@
+name: GitHub Pages
+
+on:
+  push:
+    branches:
+      - github-main
+  pull_request:
+    branches:
+      - github-main
+
+jobs:
+  deploy:
+    runs-on: ubuntu-latest
+    container: containers.ligo.org/lscsoft/bilby/v2-bilby-python310
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
+          fetch-tags: true
+      - name: install
+        run: python -m pip install .
+      - name: Run jupyter notebooks
+        run: |
+          python -m ipykernel install
+          cd examples/tutorials
+          jupyter nbconvert --to notebook --execute *.ipynb --output-dir ../../docs
+          cd -
+      - name: Build docs
+        run: |
+          cd docs
+          make clean
+          make html
+          cd -
+      # Upload the build docs as an artifact until we expose the pages
+      - uses: actions/upload-artifact@v4
+        with:
+          name: docs-html
+          path: docs/_build/html/
+      # Disable docs deployment until we move primarily to GitHub
+      # - name: Deploy
+      #   uses: peaceiris/actions-gh-pages@v3
+      #   if: ${{ github.ref == 'refs/heads/master' }}
+      #   with:
+      #     github_token: ${{ secrets.GITHUB_TOKEN }}
+      #     publish_dir: .

.github/workflows/pre-commit.yml

@@ -0,0 +1,20 @@
+name: pre-commit
+
+on:
+  push:
+    branches: [ "github-main" ]
+  pull_request:
+    branches: [ "github-main" ]
+
+jobs:
+  pre-commit:
+    runs-on: ubuntu-latest
+    steps:
+    - uses: actions/checkout@v3
+    - uses: actions/setup-python@v4
+    - name: Install jupyter
+      run: |
+        python -m pip install jupyterlab
+    - uses: pre-commit/[email protected]
+    - uses: pre-commit-ci/[email protected]
+      if: always()

.github/workflows/unit-tests.yml

@@ -0,0 +1,34 @@
+# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
+# For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python
+
+name: Python package
+
+on:
+  push:
+    branches: [ "github-main" ]
+  pull_request:
+    branches: [ "github-main" ]
+
+jobs:
+  build:
+
+    runs-on: ubuntu-latest
+    container: containers.ligo.org/lscsoft/bilby/v2-bilby-python310
+    strategy:
+      fail-fast: false
+
+    steps:
+    - uses: actions/checkout@v3
+    - name: Install package
+      run: |
+        python -m pip install .
+        conda list --show-channel-urls
+    # - name: Run precommits
+    #   run: |
+    #     pre-commit run --all-files --verbose --show-diff-on-failure
+    - name: Run unit tests
+      run: |
+        pytest --cov=bilby --durations 10
+    - name: Run sampler tests
+      run: |
+        pytest test/integration/sampler_run_test.py --durations 10 -v