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[ENH] Update config to support microscopy, qMRI, PET, ASL #840

Merged
merged 36 commits into from
Apr 24, 2022
Merged

[ENH] Update config to support microscopy, qMRI, PET, ASL #840

merged 36 commits into from
Apr 24, 2022

Commits on Apr 14, 2022

  1. add Pipfile to gitingore

    @Remi-Gau
    Remi-Gau committed Apr 14, 2022
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  2. add missing datatypes to config

    @Remi-Gau
    Remi-Gau committed Apr 14, 2022
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  3. add microscopy entities to config

    @Remi-Gau
    Remi-Gau committed Apr 14, 2022
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  4. add draft path patterns microscopy and qMRI

    @Remi-Gau
    Remi-Gau committed Apr 14, 2022
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  5. clean up and refactor

    @Remi-Gau
    Remi-Gau committed Apr 14, 2022
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  6. add extension micr

    @Remi-Gau
    Remi-Gau committed Apr 14, 2022
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  7. add suffixes micr

    @Remi-Gau
    Remi-Gau committed Apr 14, 2022
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  8. add photo files for micr

    @Remi-Gau
    Remi-Gau committed Apr 14, 2022
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  9. add parametric parts of qMRI

    @Remi-Gau
    Remi-Gau committed Apr 14, 2022
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  10. add PET tracer entity to config

    @Remi-Gau
    Remi-Gau committed Apr 14, 2022
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  11. add path patterns for PET

    @Remi-Gau
    Remi-Gau committed Apr 14, 2022
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  12. add path patterns for ASL

    @Remi-Gau
    Remi-Gau committed Apr 14, 2022
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  13. refactor some patterns

    @Remi-Gau
    Remi-Gau committed Apr 14, 2022
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  14. add patterns for json files in root of dataset

    @Remi-Gau
    Remi-Gau committed Apr 14, 2022
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  15. update bids nodot config and use {suffix<>} everywhere

    @Remi-Gau
    Remi-Gau committed Apr 14, 2022
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  16. add tracer entity to no dot config

    @Remi-Gau
    Remi-Gau committed Apr 14, 2022
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  17. fix entity order in filename pattern for no dot config

    @Remi-Gau
    Remi-Gau committed Apr 14, 2022
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Commits on Apr 15, 2022

  1. fix typo

    @Remi-Gau
    Remi-Gau committed Apr 15, 2022
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  2. remove problematic path pattern

    @Remi-Gau
    Remi-Gau committed Apr 15, 2022
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  3. readd sample entity to micr filename pattern in root of dataset

    @Remi-Gau
    Remi-Gau committed Apr 15, 2022
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  4. sample is actually required for micr

    @Remi-Gau
    Remi-Gau committed Apr 15, 2022
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  5. update test layout on bids-example

    @Remi-Gau
    Remi-Gau committed Apr 15, 2022
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  6. Update bids/layout/config/bids.json 

    Co-authored-by: Chris Markiewicz <[email protected]>
    @Remi-Gau @effigies
    Remi-Gau and effigies authored Apr 15, 2022
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  7. Update bids/layout/config/bids.json 

    Co-authored-by: Chris Markiewicz <[email protected]>
    @Remi-Gau @effigies
    Remi-Gau and effigies authored Apr 15, 2022
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  8. fix separator position for session

    @Remi-Gau
    Remi-Gau committed Apr 15, 2022
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Commits on Apr 16, 2022

  1. Merge branch 'master' of https://github.com/bids-standard/pybids into… 

    … update_config
    @Remi-Gau
    Remi-Gau committed Apr 16, 2022
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Commits on Apr 18, 2022

  1. add more bids example layout tests and flag MPM as xfail

    @Remi-Gau
    Remi-Gau committed Apr 18, 2022
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  2. flag qmri_qsm as failure expected too

    @Remi-Gau
    Remi-Gau committed Apr 18, 2022
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Commits on Apr 19, 2022

  1. make xfail strict to detect tests when they start passing

    @Remi-Gau
    Remi-Gau committed Apr 19, 2022
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  2. Update bids/layout/config/bids.json 

    Co-authored-by: mariehbourget <[email protected]>
    @Remi-Gau @mariehbourget
    Remi-Gau and mariehbourget authored Apr 19, 2022
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  3. Update bids/layout/config/bids.json 

    Co-authored-by: mariehbourget <[email protected]>
    @Remi-Gau @mariehbourget
    Remi-Gau and mariehbourget authored Apr 19, 2022
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  4. fix more typos

    @Remi-Gau
    Remi-Gau committed Apr 19, 2022
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Commits on Apr 24, 2022

  1. Merge branch 'master' of https://github.com/bids-standard/pybids into… 

    … update_config
    @Remi-Gau
    Remi-Gau committed Apr 24, 2022
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  2. use bids-example submodule and fixture for testing

    @Remi-Gau
    Remi-Gau committed Apr 24, 2022
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  3. remove makefile recipe for bids-examles

    @Remi-Gau
    Remi-Gau committed Apr 24, 2022
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  4. MNT: Restore makefile

    @effigies
    effigies committed Apr 24, 2022
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