FIX: IntendedFor errors detected by schema validator #438
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https://bids-specification.readthedocs.io/en/stable/common-principles.html#specification-of-paths I'm a fool. |
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That's the separator, not the initializer. It's followed with:
Which I would interpret to mean that they shouldn't have an initial |
=== Do not change lines below ===
{
"chain": [],
"cmd": "sed -i -e 's/\\(.*IntendedFor.: .\\)sub-.../\\1/' sub-01/ses-meg/meg/sub-01_ses-meg_coordsystem.json sub-02/ses-meg/meg/sub-02_ses-meg_coordsystem.json sub-03/ses-meg/meg/sub-03_ses-meg_coordsystem.json sub-04/ses-meg/meg/sub-04_ses-meg_coordsystem.json sub-05/ses-meg/meg/sub-05_ses-meg_coordsystem.json sub-06/ses-meg/meg/sub-06_ses-meg_coordsystem.json sub-07/ses-meg/meg/sub-07_ses-meg_coordsystem.json sub-08/ses-meg/meg/sub-08_ses-meg_coordsystem.json sub-09/ses-meg/meg/sub-09_ses-meg_coordsystem.json sub-10/ses-meg/meg/sub-10_ses-meg_coordsystem.json sub-11/ses-meg/meg/sub-11_ses-meg_coordsystem.json sub-12/ses-meg/meg/sub-12_ses-meg_coordsystem.json sub-13/ses-meg/meg/sub-13_ses-meg_coordsystem.json sub-14/ses-meg/meg/sub-14_ses-meg_coordsystem.json sub-15/ses-meg/meg/sub-15_ses-meg_coordsystem.json sub-16/ses-meg/meg/sub-16_ses-meg_coordsystem.json",
"exit": 0,
"extra_inputs": [],
"inputs": [],
"outputs": [],
"pwd": "ds000117"
}
^^^ Do not change lines above ^^^
=== Do not change lines below ===
{
"chain": [],
"cmd": "sed -i -e 's/\\(.*IntendedFor.:.\\).*sub-0001\\//\\1/' sub-0001/meg/sub-0001_coordsystem.json",
"exit": 0,
"extra_inputs": [],
"inputs": [],
"outputs": [],
"pwd": "ds000246"
}
^^^ Do not change lines above ^^^
=== Do not change lines below ===
{
"chain": [],
"cmd": "sed -i -e 's/\\(.*IntendedFor\":.*\"\\).*sub-000.\\//\\1/' sub-0002/ses-0001/meg/sub-0002_ses-0001_coordsystem.json sub-0003/ses-0001/meg/sub-0003_ses-0001_coordsystem.json sub-0004/ses-0001/meg/sub-0004_ses-0001_coordsystem.json sub-0006/ses-0001/meg/sub-0006_ses-0001_coordsystem.json sub-0007/ses-0001/meg/sub-0007_ses-0001_coordsystem.json",
"exit": 0,
"extra_inputs": [],
"inputs": [],
"outputs": [],
"pwd": "ds000247"
}
^^^ Do not change lines above ^^^
=== Do not change lines below ===
{
"chain": [],
"cmd": "sed -i -e 's/\\(.*AssociatedEmptyRoom\":\"\\)\\//\\1/' sub-0002/ses-0001/meg/sub-0002_ses-0001_task-rest_run-01_meg.json sub-0003/ses-0001/meg/sub-0003_ses-0001_task-rest_run-01_meg.json sub-0004/ses-0001/meg/sub-0004_ses-0001_task-rest_run-01_meg.json sub-0006/ses-0001/meg/sub-0006_ses-0001_task-rest_run-01_meg.json sub-0007/ses-0001/meg/sub-0007_ses-0001_task-rest_run-01_meg.json sub-emptyroom/ses-18901014/meg/sub-emptyroom_ses-18901014_task-noise_run-01_meg.json sub-emptyroom/ses-18901015/meg/sub-emptyroom_ses-18901015_task-noise_run-01_meg.json sub-emptyroom/ses-18910228/meg/sub-emptyroom_ses-18910228_task-noise_run-01_meg.json sub-emptyroom/ses-18910303/meg/sub-emptyroom_ses-18910303_task-noise_run-01_meg.json sub-emptyroom/ses-18910512/meg/sub-emptyroom_ses-18910512_task-noise_run-01_meg.json",
"exit": 0,
"extra_inputs": [],
"inputs": [],
"outputs": [],
"pwd": "ds000247"
}
^^^ Do not change lines above ^^^
=== Do not change lines below ===
{
"chain": [],
"cmd": "sed -i -e 's/\\(.*IntendedFor\":.*\"\\).*sub-03\\//\\1/' sub-004/ses-1/sub-004_ses-1_task-FacePerception_coordsystem.json",
"exit": 0,
"extra_inputs": [],
"inputs": [],
"outputs": [],
"pwd": "eeg_ds003645s_hed_demo"
}
^^^ Do not change lines above ^^^
=== Do not change lines below ===
{
"chain": [],
"cmd": "sed -i -e '/.*IntendedFor.*/d' sub-004/ses-1/sub-004_ses-1_task-FacePerception_coordsystem.json",
"exit": 0,
"extra_inputs": [],
"inputs": [],
"outputs": [],
"pwd": "eeg_ds003645s_hed_demo"
}
^^^ Do not change lines above ^^^
=== Do not change lines below ===
{
"chain": [],
"cmd": "sed -i -e 's/\\(.*IntendedFor\":.*\"\\)\\//\\1/' sub-bp/ses-01/ieeg/sub-bp_ses-01_space-ACPC_coordsystem.json sub-bp/ses-01/ieeg/sub-bp_ses-01_space-Talairach_coordsystem.json sub-ca/ses-01/ieeg/sub-ca_ses-01_space-ACPC_coordsystem.json sub-ca/ses-01/ieeg/sub-ca_ses-01_space-Talairach_coordsystem.json sub-cc/ses-01/ieeg/sub-cc_ses-01_space-ACPC_coordsystem.json sub-cc/ses-01/ieeg/sub-cc_ses-01_space-Talairach_coordsystem.json sub-de/ses-01/ieeg/sub-de_ses-01_space-Talairach_coordsystem.json sub-fp/ses-01/ieeg/sub-fp_ses-01_space-Talairach_coordsystem.json sub-gc/ses-01/ieeg/sub-gc_ses-01_space-Talairach_coordsystem.json sub-hh/ses-01/ieeg/sub-hh_ses-01_space-Talairach_coordsystem.json sub-hl/ses-01/ieeg/sub-hl_ses-01_space-ACPC_coordsystem.json sub-hl/ses-01/ieeg/sub-hl_ses-01_space-Talairach_coordsystem.json sub-jc/ses-01/ieeg/sub-jc_ses-01_space-ACPC_coordsystem.json sub-jc/ses-01/ieeg/sub-jc_ses-01_space-Talairach_coordsystem.json sub-jm/ses-01/ieeg/sub-jm_ses-01_space-Talairach_coordsystem.json sub-jt/ses-01/ieeg/sub-jt_ses-01_space-Talairach_coordsystem.json sub-rh/ses-01/ieeg/sub-rh_ses-01_space-Talairach_coordsystem.json sub-rr/ses-01/ieeg/sub-rr_ses-01_space-Talairach_coordsystem.json sub-ug/ses-01/ieeg/sub-ug_ses-01_space-Talairach_coordsystem.json sub-wc/ses-01/ieeg/sub-wc_ses-01_space-ACPC_coordsystem.json sub-wc/ses-01/ieeg/sub-wc_ses-01_space-Talairach_coordsystem.json sub-zt/ses-01/ieeg/sub-zt_ses-01_space-ACPC_coordsystem.json sub-zt/ses-01/ieeg/sub-zt_ses-01_space-Talairach_coordsystem.json",
"exit": 0,
"extra_inputs": [],
"inputs": [],
"outputs": [],
"pwd": "ieeg_motorMiller2007"
}
^^^ Do not change lines above ^^^
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I am also submitting these fixes to the OpenNeuro dataset authors.
Leaving as draft until I get through all of the validator failures.
Closes #437.