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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,6 @@ | ||
| .variant-edit-dialog { | ||
| &__form-control { | ||
| min-width: 160px; | ||
| margin: 0 0 16px; | ||
| } | ||
| } |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,140 @@ | ||
| import React, { | ||
| useState, useEffect, useContext, useCallback, | ||
| } from 'react'; | ||
| import { | ||
| Dialog, | ||
| DialogTitle, | ||
| DialogContent, | ||
| DialogActions, | ||
| Button, | ||
| } from '@mui/material'; | ||
|
|
||
| import api from '@/services/api'; | ||
| import AsyncButton from '@/components/AsyncButton'; | ||
|
|
||
| import ConfirmContext from '@/context/ConfirmContext'; | ||
| import ReportContext from '@/context/ReportContext'; | ||
| import snackbar from '@/services/SnackbarUtils'; | ||
| import useConfirmDialog from '@/hooks/useConfirmDialog'; | ||
| import { | ||
| CopyNumberType, SmallMutationType, StructuralVariantType, ExpOutliersType, | ||
| } from '@/common'; | ||
| import { GeneVariantType } from '@/views/ReportView/components/GenomicSummary/types'; | ||
|
|
||
| import './index.scss'; | ||
|
|
||
| type VariantEditDialogProps = { | ||
| editData: SmallMutationType | CopyNumberType | StructuralVariantType | ExpOutliersType; | ||
| variantType: string; | ||
| isOpen: boolean; | ||
| onClose: (newData?: SmallMutationType | CopyNumberType | StructuralVariantType | ExpOutliersType) => void; | ||
| showErrorSnackbar: (message: string) => void; | ||
| }; | ||
|
|
||
| const VariantEditDialog = ({ | ||
| editData, | ||
| variantType, | ||
| isOpen = false, | ||
| onClose, | ||
| showErrorSnackbar, | ||
| }: VariantEditDialogProps): JSX.Element => { | ||
| const { showConfirmDialog } = useConfirmDialog(); | ||
| const { report } = useContext(ReportContext); | ||
| const { isSigned } = useContext(ConfirmContext); | ||
| const [variant, setVariant] = useState(''); | ||
| const [variants, setVariants] = useState<GeneVariantType[]>(); | ||
| const [isApiCalling, setIsApiCalling] = useState(false); | ||
|
|
||
| useEffect(() => { | ||
| if (editData) { | ||
| let newVariant; | ||
| switch (variantType) { | ||
| case 'snv': | ||
| newVariant = `${editData?.gene.name}:${editData?.proteinChange}`; | ||
| setVariant(newVariant); | ||
| break; | ||
| case 'cnv': | ||
| newVariant = `${editData?.gene.name} (${editData?.cnvState})`; | ||
| setVariant(newVariant); | ||
| break; | ||
| case 'sv': | ||
| newVariant = `${editData?.displayName}`; | ||
| setVariant(newVariant); | ||
| break; | ||
| case 'exp': | ||
| newVariant = `${editData?.gene.name} (${editData?.expressionState})`; | ||
| setVariant(newVariant); | ||
| break; | ||
| default: | ||
| break; | ||
| } | ||
| } | ||
| }, [editData, variantType]); | ||
|
|
||
| useEffect(() => { | ||
| async function fetchVariants() { | ||
| const variantsResp = api.get(`/reports/${report.ident}/summary/genomic-alterations-identified`).request(); | ||
| if (variantsResp) { | ||
| setVariants(await variantsResp); | ||
| } | ||
| } | ||
|
|
||
| fetchVariants(); | ||
| }, [report.ident]); | ||
|
|
||
| const availableVariants = variants?.map(({ geneVariant }) => geneVariant); | ||
|
|
||
| const handleSubmit = useCallback(async () => { | ||
| if (!availableVariants.includes(variant)) { | ||
| setIsApiCalling(true); | ||
| const req = api.post(`/reports/${report.ident}/summary/genomic-alterations-identified`, { geneVariant: variant }); | ||
| try { | ||
| if (isSigned) { | ||
| showConfirmDialog(req); | ||
| setIsApiCalling(false); | ||
| } else { | ||
| await req.request(); | ||
| onClose({ ...editData }); | ||
| snackbar.success('Variant added to key alterations.'); | ||
| } | ||
| } catch (err) { | ||
| showErrorSnackbar(`Error updating key alterations: ${err.message}`); | ||
| onClose(); | ||
| } finally { | ||
| setIsApiCalling(false); | ||
| } | ||
| } else { | ||
| snackbar.error('Variant already in key alterations.'); | ||
| onClose(); | ||
| } | ||
| }, [availableVariants, variant, report.ident, isSigned, showConfirmDialog, onClose, editData, showErrorSnackbar]); | ||
|
|
||
| const handleClose = useCallback(() => { | ||
| onClose(); | ||
| }, [onClose]); | ||
|
|
||
| return ( | ||
| <Dialog open={isOpen} maxWidth="sm" fullWidth className="variant-edit-dialog"> | ||
| <DialogTitle>Key Alterations Edit</DialogTitle> | ||
| <DialogContent> | ||
| <div className="variant-edit-dialog__body"> | ||
| <p> | ||
| Variant: | ||
| {' '} | ||
| {variant} | ||
| </p> | ||
| </div> | ||
| <DialogActions className="variant-edit-dialog__actions"> | ||
| <AsyncButton isLoading={isApiCalling} color="secondary" onClick={handleSubmit} component="label"> | ||
| Add to Summary | ||
| </AsyncButton> | ||
| <Button onClick={handleClose}> | ||
| Cancel | ||
| </Button> | ||
| </DialogActions> | ||
| </DialogContent> | ||
| </Dialog> | ||
| ); | ||
| }; | ||
|
|
||
| export default VariantEditDialog; |
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