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remove duplicated section
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oneillkza committed Sep 5, 2024
1 parent 8b976a4 commit 88e9dcb
Showing 1 changed file with 0 additions and 17 deletions.
17 changes: 0 additions & 17 deletions .github/workflows/renderNotebooks.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -47,23 +47,6 @@ jobs:
tags: ${{ steps.meta_rmd.outputs.tags }}
labels: ${{ steps.meta_rmd.outputs.labels }}

- name: Run Docker container to compile changed R Markdown files
uses: addnab/docker-run-action@v3
with:
image: ${{ steps.meta_rmd.outputs.tags }}
options: -v ${{ github.workspace }}:/workspace --rm -u root
run: |
CHANGED_RMD_FILES=$(git diff --name-only HEAD^ HEAD -- '*.Rmd' '*.rmd')
if [ -n "$CHANGED_RMD_FILES" ]; then
echo "Changed R Markdown files:"
echo "$CHANGED_RMD_FILES"
for RMD in $CHANGED_RMD_FILES; do
Rscript -e 'for (f in commandArgs(TRUE)) if (file.exists(f)) rmarkdown::render(f, output_format = "all")' /workspace/$RMD
done
else
echo "No changed R Markdown files found. Skipping execution."
fi

- name: Check for changed R Markdown files
id: check_rmd_files
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