Update jupyter.Dockerfile #66
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| # Github action that renders R markdown when PR is opened | |
| # All R markdown is run in container/rmd.Dockerfile | |
| on: | |
| pull_request: | |
| types: [opened, reopened, edited] | |
| push: | |
| workflow_dispatch: | |
| name: render-rmarkdown | |
| jobs: | |
| render-rmarkdown: | |
| runs-on: ubuntu-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Build and push Docker image | |
| uses: docker/build-push-action@v5 | |
| with: | |
| file: container/rmd.Dockerfile | |
| context: . | |
| push: false # Set to true if you want to push the image to a registry | |
| tags: notebook-runner | |
| - name: Run Docker container to compile assets | |
| uses: addnab/docker-run-action@v3 | |
| with: | |
| image: notebook-runner | |
| options: -v ${{ github.workspace }}:/workspace --rm -u root | |
| run: | | |
| RMD_FILES=$( find /workspace -name "*Rmd" -o -name "*rmd" ) | |
| if [ -n "$RMD_FILES" ]; then | |
| echo $RMD_FILES | |
| for RMD in $RMD_FILES | |
| do | |
| Rscript -e 'for (f in commandArgs(TRUE)) if (file.exists(f)) rmarkdown::render(f, output_format = "all")' $RMD | |
| done | |
| else | |
| echo "No R markdown found. Skipping execution." | |
| fi | |
| - uses: stefanzweifel/git-auto-commit-action@v5 |