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warrenlr authored Apr 15, 2023
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## HLAminer v1.4 Rene L. Warren (c) 2011-2023


### Manual Reference Pages – HLAminer - Derivation of HLA class I and class II predictions from shotgun sequence datasets
### Manual Reference Pages – HLAminer - Derivation of HLA (Human Leukocyte Antigen) class I and class II predictions from shotgun sequence datasets
* This manual assumes that you have a working knowledge of unix, and some shell and perl scripting experience

### NAME
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### SYNOPSIS <a name=synopsis></a>
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HLAminer is a pipeline for predicting HLA from shotgun sequence data (ie. whole genome, whole transcriptome/RNA-Seq, exome), at the group and allele resolution.
HLAminer is a pipeline for predicting Human Leukocyte Antigen (HLA) signatures from shotgun sequence data (ie. whole genome, whole transcriptome/RNA-Seq, exome), at the group and allele resolution.
It supports predictions from a variety of DNA sequencing technologies including those from Illumina, MGI, PacBio and Oxford Nanopore.
Predictions are either derived from targeted assembly or direct alignment.

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