Brooklyn plot for single cell/nuclei RNA sequencing data. This package enables a Pearson pairwise (ie., many to many) gene comparison and outputs co-expression patterns of genes across the genome. It generates a Brooklyn plot for visualization. More about this in the documentation below.
Arun H Patil, Matthew N. McCall and Marc K Halushka. Brooklyn plots to identify co-expression dysregulation in single cell sequencing. NAR Genomics and Bioinformatics. 2023.