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Amplicon caller in annotation script #50

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rambaut opened this issue Dec 18, 2019 · 0 comments
Open

Amplicon caller in annotation script #50

rambaut opened this issue Dec 18, 2019 · 0 comments
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enhancement New feature or request
Milestone
v2.0

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@rambaut
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rambaut commented Dec 18, 2019

The annotation script should read the BED file (or similar) and use the MiniMap2 coordinates to infer the amplicon for each read. Some QC could also be done here - I.e. filter multi amplicon chimeras etc. The amplicon number would be added as a column in the annotation CSV file for use by the RAMPART UI.
@rambaut rambaut added the enhancement New feature or request label Dec 18, 2019
@rambaut rambaut added this to the V1.1 milestone Dec 18, 2019
@rambaut rambaut modified the milestones: V1.1, v2.0 Jan 9, 2020
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enhancement New feature or request
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v2.0
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@rambaut