remove the filler code from emcee fit #212
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
# This workflow will install Python dependencies, | |
# run tests and lint with a variety of Python versions/ | |
name: Tests | |
on: | |
push: | |
branches: ["main"] | |
pull_request: | |
branches: ["main"] | |
jobs: | |
build: | |
runs-on: ubuntu-latest | |
strategy: | |
fail-fast: false | |
matrix: | |
python-version: ["3.10", "3.11"] | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Cache test data | |
uses: actions/cache@v3 | |
with: | |
path: src/scope/data | |
key: ${{ runner.os }}-test-data-${{ hashFiles('**/test-data-hash') }} | |
restore-keys: | | |
${{ runner.os }}-test-data- | |
- name: Download test data if not cached | |
if: steps.cache-test-data.outputs.cache-hit != 'true' | |
run: | | |
echo "Downloading test data..." | |
cd src/scope | |
chmod +x download_data.bash | |
./download_data.bash | |
cd ../../ | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v3 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install dependencies | |
run: | | |
python3 -m pip install -U pip | |
python3 -m pip install -U setuptools setuptools_scm pep517 | |
python3 -m pip install -e . | |
- name: Run tests | |
run: | | |
pip install pytest | |
pip install pytest-cov | |
export NUMBA_DISABLE_JIT=1 | |
pytest --cov=src/scope --cov-report=xml | |
- name: Upload coverage reports to Codecov | |
uses: codecov/codecov-action@v3 | |
env: | |
CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
with: | |
directory: ./coverage/reports/ | |
env_vars: OS,PYTHON | |
fail_ci_if_error: true | |
files: ./coverage.xml | |
flags: unittests | |
name: codecov-umbrella | |
path_to_write_report: ./coverage/codecov_report.txt | |
verbose: true |