[SYSTEMDS-3549] Hidden Markov model builtin #279
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| #------------------------------------------------------------- | |
| # | |
| # Licensed to the Apache Software Foundation (ASF) under one | |
| # or more contributor license agreements. See the NOTICE file | |
| # distributed with this work for additional information | |
| # regarding copyright ownership. The ASF licenses this file | |
| # to you under the Apache License, Version 2.0 (the | |
| # "License"); you may not use this file except in compliance | |
| # with the License. You may obtain a copy of the License at | |
| # | |
| # http://www.apache.org/licenses/LICENSE-2.0 | |
| # | |
| # Unless required by applicable law or agreed to in writing, | |
| # software distributed under the License is distributed on an | |
| # "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY | |
| # KIND, either express or implied. See the License for the | |
| # specific language governing permissions and limitations | |
| # under the License. | |
| # | |
| #------------------------------------------------------------- | |
| name: Java Test | |
| on: | |
| push: | |
| paths-ignore: | |
| - 'docs/**' | |
| - '*.md' | |
| - '*.html' | |
| - 'src/main/python/**' | |
| - 'dev/**' | |
| branches: | |
| - main | |
| pull_request: | |
| paths-ignore: | |
| - 'docs/**' | |
| - '*.md' | |
| - '*.html' | |
| - 'src/main/python/**' | |
| - 'dev/**' | |
| branches: | |
| - main | |
| jobs: | |
| java_tests: | |
| runs-on: ${{ matrix.os }} | |
| timeout-minutes: 90 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest] | |
| tests: [ | |
| "org.apache.sysds.test.applications.**", | |
| "**.test.usertest.**", | |
| "**.component.c**.**", | |
| "**.component.e**.**,**.component.f**.**,**.component.m**.**", | |
| "**.component.p**.**,**.component.t**.**", | |
| "**.functions.a**.**,**.functions.binary.frame.**,**.functions.binary.matrix.**,**.functions.binary.scalar.**,**.functions.binary.tensor.**", | |
| "**.functions.blocks.**,**.functions.data.rand.**,", | |
| "**.functions.countDistinct.**,**.functions.countDistinctApprox.**,**.functions.data.misc.**,**.functions.lineage.**", | |
| "**.functions.compress.**,**.functions.data.tensor.**,**.functions.codegenalg.parttwo.**,**.functions.codegen.**,**.functions.caching.**", | |
| "**.functions.binary.matrix_full_cellwise.**,**.functions.binary.matrix_full_other.**", | |
| "**.functions.federated.algorithms.**,**.functions.federated.io.**,**.functions.federated.paramserv.**", | |
| "**.functions.federated.primitives.**,**.functions.federated.transform.**", | |
| "**.functions.federated.monitoring.**,**.functions.federated.multitenant.**", | |
| "**.functions.federated.codegen.**,**.functions.federated.FederatedTestObjectConstructor", | |
| "**.functions.codegenalg.partone.**", | |
| "**.functions.builtin.part1.**", | |
| "**.functions.builtin.part2.**", | |
| "**.functions.frame.**,**.functions.indexing.**,**.functions.io.**,**.functions.iogen.**", | |
| "**.functions.dnn.**", | |
| "**.functions.paramserv.**", | |
| "**.functions.recompile.**,**.functions.misc.**,**.functions.mlcontext.**", | |
| "**.functions.nary.**,**.functions.quaternary.**", | |
| "**.functions.parfor.**", | |
| "**.functions.pipelines.**,**.functions.privacy.**", | |
| "**.functions.homomorphicEncryption.**", | |
| "**.functions.unary.scalar.**,**.functions.updateinplace.**,**.functions.vect.**", | |
| "**.functions.reorg.**,**.functions.rewrite.**,**.functions.ternary.**,**.functions.transform.**", | |
| "**.functions.unary.matrix.**,**.functions.linearization.**,**.functions.jmlc.**" | |
| ] | |
| name: ${{ matrix.tests }} | |
| steps: | |
| - name: Checkout Repository | |
| uses: actions/checkout@v3 | |
| - name: ${{ matrix.tests }} | |
| uses: ./.github/action/ | |
| id: test | |
| with: | |
| test-to-run: ${{ matrix.tests }} | |
| - name: Clean Github Artifact Name of Asterisks | |
| run: | | |
| ARTIFACT_NAME="transient_jacoco" | |
| ARTIFACT_NAME+="-${{ matrix.os }}" | |
| ARTIFACT_NAME+="-java-${{ matrix.java }}" | |
| ARTIFACT_NAME+="-${{ matrix.javadist }}" | |
| ARTIFACT_NAME+="-${{ matrix.tests }}" | |
| ARTIFACT_NAME=${ARTIFACT_NAME//\*/x} # replace * with x | |
| echo "ARTIFACT_NAME=$ARTIFACT_NAME" >> $GITHUB_ENV | |
| - name: Save Java Test Coverage as Artifact | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: ${{ env.ARTIFACT_NAME }} | |
| path: target/jacoco.exec | |
| retention-days: 1 | |
| determine_test_coverage: | |
| name: Determine Test Coverage | |
| runs-on: ubuntu-latest | |
| needs: [ | |
| java_tests | |
| ] | |
| steps: | |
| - name: Checkout Repository | |
| uses: actions/checkout@v3 | |
| - name: Cache Maven Dependencies | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/.m2/repository | |
| key: ${{ runner.os }}-maven-test-${{ hashFiles('**/pom.xml') }} | |
| restore-keys: | | |
| ${{ runner.os }}-maven-test- | |
| - name: Download all Jacoco Artifacts | |
| uses: actions/download-artifact@v3 | |
| with: | |
| path: target | |
| - name: Merge Jacoco Artifacts | |
| run: mvn jacoco:merge | |
| - name: Process Classes | |
| run: mvn process-classes | |
| - name: Generate Code Coverage Report | |
| run: mvn jacoco:report | |
| - name: Upload Jacoco Report Artifact PR | |
| if: (github.repository_owner == 'apache') && (github.ref_name != 'main') | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: Java Code Coverage (Jacoco) | |
| path: target/site/jacoco | |
| retention-days: 7 | |
| - name: Upload Jacoco Report Artifact Main | |
| if: (github.repository_owner == 'apache') && (github.ref_name == 'main') | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: Java Code Coverage (Jacoco) | |
| path: target/site/jacoco | |
| retention-days: 30 | |
| - name: Upload Jacoco Report Artifact Fork | |
| if: (github.repository_owner != 'apache') | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: Java Code Coverage (Jacoco) | |
| path: target/site/jacoco | |
| retention-days: 3 |