Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Adds an interface for GENEC #1023

Draft
wants to merge 96 commits into
base: main
Choose a base branch
from
Draft

Adds an interface for GENEC #1023

wants to merge 96 commits into from

Commits on Jan 25, 2022

  1. Add initial interface for GENEC

    @rieder
    rieder committed Jan 25, 2022
    Configuration menu
    Copy the full SHA
    37b7d12 View commit details
    Browse the repository at this point in the history

  2. updates

    @rieder
    rieder committed Jan 25, 2022
    Configuration menu
    Copy the full SHA
    74d2cf9 View commit details
    Browse the repository at this point in the history

  3. Merge branch 'main' into add_genec

    @rieder
    rieder committed Jan 25, 2022
    Configuration menu
    Copy the full SHA
    47c76cd View commit details
    Browse the repository at this point in the history

Commits on Feb 4, 2022

  1. updates to GENEC interface

    @rieder
    rieder committed Feb 4, 2022
    Configuration menu
    Copy the full SHA
    60bab5e View commit details
    Browse the repository at this point in the history

Commits on Feb 8, 2022

  1. add more methods

    @rieder
    rieder committed Feb 8, 2022
    Configuration menu
    Copy the full SHA
    9ca06ba View commit details
    Browse the repository at this point in the history

  2. Merge branch 'amusecode:main' into add_genec

    @rieder
    rieder authored Feb 8, 2022
    Configuration menu
    Copy the full SHA
    200d422 View commit details
    Browse the repository at this point in the history

Commits on Feb 24, 2022

  1. add firstlast functions

    @rieder
    rieder committed Feb 24, 2022
    Configuration menu
    Copy the full SHA
    9dccb91 View commit details
    Browse the repository at this point in the history

Commits on Mar 7, 2022

  1. small fix

    @rieder
    rieder committed Mar 7, 2022
    Configuration menu
    Copy the full SHA
    3ef03db View commit details
    Browse the repository at this point in the history

  2. Add setters/getters for input parameters

    @rieder
    rieder committed Mar 7, 2022
    Configuration menu
    Copy the full SHA
    047effe View commit details
    Browse the repository at this point in the history

  3. Add setters

    @rieder
    rieder committed Mar 7, 2022
    Configuration menu
    Copy the full SHA
    0715e51 View commit details
    Browse the repository at this point in the history

  4. Add parameter setters/getters

    @rieder
    rieder committed Mar 7, 2022
    Configuration menu
    Copy the full SHA
    12ba3c7 View commit details
    Browse the repository at this point in the history

  5. remove methods already defined in se.py, add others

    @rieder
    rieder committed Mar 7, 2022
    Configuration menu
    Copy the full SHA
    b4cfd70 View commit details
    Browse the repository at this point in the history

  6. remove setters/getters for 'amuseinterface' 

    This must always be True!
    @rieder
    rieder committed Mar 7, 2022
    Configuration menu
    Copy the full SHA
    79e755b View commit details
    Browse the repository at this point in the history

  7. Also support polytropic index

    @rieder
    rieder committed Mar 7, 2022
    Configuration menu
    Copy the full SHA
    4894605 View commit details
    Browse the repository at this point in the history

Commits on Mar 8, 2022

  1. work in progress

    @rieder
    rieder committed Mar 8, 2022
    Configuration menu
    Copy the full SHA
    6f31296 View commit details
    Browse the repository at this point in the history

Commits on Mar 10, 2022

  1. add unit to vwant

    @rieder
    rieder committed Mar 10, 2022
    Configuration menu
    Copy the full SHA
    0122f30 View commit details
    Browse the repository at this point in the history

Commits on Mar 13, 2022

  1. add test script

    @rieder
    rieder committed Mar 13, 2022
    Configuration menu
    Copy the full SHA
    e5096c2 View commit details
    Browse the repository at this point in the history

Commits on Mar 15, 2022

  1. Add script with plotting class

    @rieder
    rieder committed Mar 15, 2022
    Configuration menu
    Copy the full SHA
    e9b490c View commit details
    Browse the repository at this point in the history

  2. Merge branch 'main' into add_genec

    @rieder
    rieder committed Mar 15, 2022
    Configuration menu
    Copy the full SHA
    dd600c1 View commit details
    Browse the repository at this point in the history

Commits on Mar 16, 2022

  1. Start work on stellar structure plots

    @rieder
    rieder committed Mar 16, 2022
    Configuration menu
    Copy the full SHA
    2b72e7e View commit details
    Browse the repository at this point in the history

  2. update test script

    @rieder
    rieder committed Mar 16, 2022
    Configuration menu
    Copy the full SHA
    7b0a69f View commit details
    Browse the repository at this point in the history

  3. use mass profile, not radius profile

    @rieder
    rieder committed Mar 16, 2022
    Configuration menu
    Copy the full SHA
    2ecf15c View commit details
    Browse the repository at this point in the history

Commits on Mar 24, 2022

  1. changes

    @rieder
    rieder committed Mar 24, 2022
    Configuration menu
    Copy the full SHA
    3bd7173 View commit details
    Browse the repository at this point in the history

  2. fix error

    @rieder
    rieder committed Mar 24, 2022
    Configuration menu
    Copy the full SHA
    60d7e13 View commit details
    Browse the repository at this point in the history

  3. one more fix

    @rieder
    rieder committed Mar 24, 2022
    Configuration menu
    Copy the full SHA
    95d8688 View commit details
    Browse the repository at this point in the history

  4. disable for now

    @rieder
    rieder committed Mar 24, 2022
    Configuration menu
    Copy the full SHA
    cf93d5a View commit details
    Browse the repository at this point in the history

Commits on Mar 25, 2022

  1. save star to a single file

    @rieder
    rieder committed Mar 25, 2022
    Configuration menu
    Copy the full SHA
    ccd573e View commit details
    Browse the repository at this point in the history

  2. Interface updates - now also store abundances in the star particle

    @rieder
    rieder committed Mar 25, 2022
    Configuration menu
    Copy the full SHA
    b9e61a9 View commit details
    Browse the repository at this point in the history

  3. store phase in plotting

    @rieder
    rieder committed Mar 25, 2022
    Configuration menu
    Copy the full SHA
    93c3644 View commit details
    Browse the repository at this point in the history

  4. WIP

    @rieder
    rieder committed Mar 25, 2022
    Configuration menu
    Copy the full SHA
    3cb494c View commit details
    Browse the repository at this point in the history

  5. Support HDF5 compression of AMUSE files 

    use with 'compression=True' or 'compression="hdf5", compression_opts=compression_level'
(compression level is a number up to 9)
    @rieder
    rieder committed Mar 25, 2022
    Configuration menu
    Copy the full SHA
    152be90 View commit details
    Browse the repository at this point in the history

  6. Merge branch 'feature/hdf5_compression' into add_genec

    @rieder
    rieder committed Mar 25, 2022
    Configuration menu
    Copy the full SHA
    ebb54c5 View commit details
    Browse the repository at this point in the history

  7. updates

    @rieder
    rieder committed Mar 25, 2022
    Configuration menu
    Copy the full SHA
    9afb216 View commit details
    Browse the repository at this point in the history

  8. add test for compressed AMUSE file (v 2.0 only)

    @rieder
    rieder committed Mar 25, 2022
    Configuration menu
    Copy the full SHA
    fbf5be7 View commit details
    Browse the repository at this point in the history

  9. Merge branch 'feature/hdf5_compression' into add_genec

    @rieder
    rieder committed Mar 25, 2022
    Configuration menu
    Copy the full SHA
    8c5be7c View commit details
    Browse the repository at this point in the history

Commits on Mar 30, 2022

  1. Add getters/setters

    @rieder
    rieder committed Mar 30, 2022
    Configuration menu
    Copy the full SHA
    7f9e978 View commit details
    Browse the repository at this point in the history

  2. Updates to test script (WIP)

    @rieder
    rieder committed Mar 30, 2022
    Configuration menu
    Copy the full SHA
    8c3badb View commit details
    Browse the repository at this point in the history

Commits on Apr 11, 2022

  1. interface updates

    @rieder
    rieder committed Apr 11, 2022
    Configuration menu
    Copy the full SHA
    51009d0 View commit details
    Browse the repository at this point in the history

  2. Merge commit '880bed106eb3a23b5bf1bebf83cb98f377122f02' into add_genec 

    # Conflicts:
#	src/amuse/io/store_v2.py
    @rieder
    rieder committed Apr 11, 2022
    Configuration menu
    Copy the full SHA
    bad2417 View commit details
    Browse the repository at this point in the history

Commits on May 12, 2022

  1. updates

    @rieder
    rieder committed May 12, 2022
    Configuration menu
    Copy the full SHA
    e6e7464 View commit details
    Browse the repository at this point in the history

  2. Merge commit 'b81504ffa12fced1b94e0014df8610a1d363c10f' into add_genec

    @rieder
    rieder committed May 12, 2022
    Configuration menu
    Copy the full SHA
    c43ffe1 View commit details
    Browse the repository at this point in the history

Commits on Jun 14, 2022

  1. Merge branch 'main' into add_genec

    @rieder
    rieder committed Jun 14, 2022
    Configuration menu
    Copy the full SHA
    4c4ef8c View commit details
    Browse the repository at this point in the history

Commits on Oct 5, 2022

  1. Merge branch 'main' into add_genec

    @rieder
    rieder committed Oct 5, 2022
    Configuration menu
    Copy the full SHA
    24e5dc8 View commit details
    Browse the repository at this point in the history

Commits on Oct 31, 2022

  1. small update to Makefile

    @rieder
    rieder committed Oct 31, 2022
    Configuration menu
    Copy the full SHA
    23a42f3 View commit details
    Browse the repository at this point in the history

  2. interface updates

    @rieder
    rieder committed Oct 31, 2022
    Configuration menu
    Copy the full SHA
    30f57cf View commit details
    Browse the repository at this point in the history

  3. update test script

    @rieder
    rieder committed Oct 31, 2022
    Configuration menu
    Copy the full SHA
    9906e60 View commit details
    Browse the repository at this point in the history

  4. simplify Makefile for GENEC (wip)

    @rieder
    rieder committed Oct 31, 2022
    Configuration menu
    Copy the full SHA
    9233cbe View commit details
    Browse the repository at this point in the history

  5. small update (wip)

    @rieder
    rieder committed Oct 31, 2022
    Configuration menu
    Copy the full SHA
    45b5d42 View commit details
    Browse the repository at this point in the history

Commits on Nov 8, 2022

  1. fix plotting bug

    @rieder
    rieder committed Nov 8, 2022
    Configuration menu
    Copy the full SHA
    11b7f43 View commit details
    Browse the repository at this point in the history

Commits on Nov 22, 2022

  1. Merge remote-tracking branch 'origin/main' into add_genec

    @rieder
    rieder committed Nov 22, 2022
    Configuration menu
    Copy the full SHA
    cbcb3e1 View commit details
    Browse the repository at this point in the history

Commits on Nov 24, 2022

  1. Updates to AMUSE-Genec

    @rieder
    rieder committed Nov 24, 2022
    Configuration menu
    Copy the full SHA
    57af834 View commit details
    Browse the repository at this point in the history

Commits on Dec 6, 2022

  1. Interface updates

    @rieder
    rieder committed Dec 6, 2022
    Configuration menu
    Copy the full SHA
    c6ff309 View commit details
    Browse the repository at this point in the history

Commits on Dec 14, 2022

  1. Interface updates

    @rieder
    rieder committed Dec 14, 2022
    Configuration menu
    Copy the full SHA
    77e25fe View commit details
    Browse the repository at this point in the history

  2. Test script updates

    @rieder
    rieder committed Dec 14, 2022
    Configuration menu
    Copy the full SHA
    e5c7f76 View commit details
    Browse the repository at this point in the history

  3. Merge commit '3532374b58925106811d027612a150c3ff244841' into add_genec

    @rieder
    rieder committed Dec 14, 2022
    Configuration menu
    Copy the full SHA
    ff0e835 View commit details
    Browse the repository at this point in the history

  4. cleanup

    @rieder
    rieder committed Dec 14, 2022
    Configuration menu
    Copy the full SHA
    e3c8215 View commit details
    Browse the repository at this point in the history

Commits on Dec 20, 2022

  1. updates

    @rieder
    rieder committed Dec 20, 2022
    Configuration menu
    Copy the full SHA
    f279635 View commit details
    Browse the repository at this point in the history

  2. Updates to plots (add some energies, fix some bugs)

    @rieder
    rieder committed Dec 20, 2022
    Configuration menu
    Copy the full SHA
    a1346a9 View commit details
    Browse the repository at this point in the history

  3. add remaining eps

    @rieder
    rieder committed Dec 20, 2022
    Configuration menu
    Copy the full SHA
    724403e View commit details
    Browse the repository at this point in the history

  4. plotting updates

    @rieder
    rieder committed Dec 20, 2022
    Configuration menu
    Copy the full SHA
    807ac2e View commit details
    Browse the repository at this point in the history

Commits on Jan 10, 2023

  1. Revamping the interface 

    - move from code parameters to particle properties
- use simpler remote_functions
- add dicts of available properties (note: the order is very important!)
    @rieder
    rieder committed Jan 10, 2023
    Configuration menu
    Copy the full SHA
    5927b73 View commit details
    Browse the repository at this point in the history

  2. More updates / cleanup. Also add helper script for the interface.

    @rieder
    rieder committed Jan 10, 2023
    Configuration menu
    Copy the full SHA
    99574c5 View commit details
    Browse the repository at this point in the history

Commits on Feb 2, 2023

  1. newer interface version

    @rieder
    rieder committed Feb 2, 2023
    Configuration menu
    Copy the full SHA
    424e5c3 View commit details
    Browse the repository at this point in the history

Commits on Feb 15, 2023

  1. rename file

    @rieder
    rieder committed Feb 15, 2023
    Configuration menu
    Copy the full SHA
    231a0ec View commit details
    Browse the repository at this point in the history

Commits on Mar 7, 2023

  1. Merge remote-tracking branch 'origin/main' into add_genec

    @rieder
    rieder committed Mar 7, 2023
    Configuration menu
    Copy the full SHA
    f34eaac View commit details
    Browse the repository at this point in the history

  2. Merge remote-tracking branch 'origin/main' into add_genec

    @rieder
    rieder committed Mar 7, 2023
    Configuration menu
    Copy the full SHA
    afd28e4 View commit details
    Browse the repository at this point in the history

Commits on Mar 14, 2023

  1. Merge remote-tracking branch 'origin/main' into add_genec

    @rieder
    rieder committed Mar 14, 2023
    Configuration menu
    Copy the full SHA
    4d6acfe View commit details
    Browse the repository at this point in the history

Commits on Mar 22, 2023

  1. Merge commit 'aa14f8bf8a4bc865fe997e974096f76e5a2fa653' into add_genec

    @rieder
    rieder committed Mar 22, 2023
    Configuration menu
    Copy the full SHA
    e37e11d View commit details
    Browse the repository at this point in the history

Commits on May 22, 2023

  1. Merge branch 'main' into add_genec

    @rieder
    rieder committed May 22, 2023
    Configuration menu
    Copy the full SHA
    4436f16 View commit details
    Browse the repository at this point in the history

Commits on May 30, 2023

  1. Merge branch 'amusecode:main' into add_genec

    @rieder
    rieder authored May 30, 2023
    Configuration menu
    Copy the full SHA
    3365e1e View commit details
    Browse the repository at this point in the history

  2. updates

    @rieder
    rieder committed May 30, 2023
    Configuration menu
    Copy the full SHA
    167baf3 View commit details
    Browse the repository at this point in the history

  3. updates

    @rieder
    rieder committed May 30, 2023
    Configuration menu
    Copy the full SHA
    cf324dc View commit details
    Browse the repository at this point in the history

  4. updates

    @rieder
    rieder committed May 30, 2023
    Configuration menu
    Copy the full SHA
    b1ef506 View commit details
    Browse the repository at this point in the history

  5. Merge commit '3365e1e24bab105ec1e670cf9b72f94f07d4fec4' into add_genec

    @rieder
    rieder committed May 30, 2023
    Configuration menu
    Copy the full SHA
    1cd5107 View commit details
    Browse the repository at this point in the history

Commits on Jun 1, 2023

  1. take vwant into account for new stars 

    not fully working yet
    @rieder
    rieder authored Jun 1, 2023
    Configuration menu
    Copy the full SHA
    acaceaf View commit details
    Browse the repository at this point in the history

Commits on Jun 5, 2023

  1. fix: store zabelx/nbelx

    @rieder
    rieder committed Jun 5, 2023
    Configuration menu
    Copy the full SHA
    4538aa7 View commit details
    Browse the repository at this point in the history

  2. important updates

    @rieder
    rieder committed Jun 5, 2023
    Configuration menu
    Copy the full SHA
    87da6d1 View commit details
    Browse the repository at this point in the history

  3. Merge commit 'acaceaf552d7782b5d31f96b7f71ed4c75ce840f' into add_genec 

    # Conflicts:
#	src/amuse/community/genec/interface.f90
    @rieder
    rieder committed Jun 5, 2023
    Configuration menu
    Copy the full SHA
    bb4148d View commit details
    Browse the repository at this point in the history

Commits on Jun 7, 2023

  1. fix bug that would lead to Nan values if nbael was 0 

    (and a load of related issues)
    @rieder
    rieder committed Jun 7, 2023
    Configuration menu
    Copy the full SHA
    af6ccc9 View commit details
    Browse the repository at this point in the history

  2. better recommit_particles

    @rieder
    rieder committed Jun 7, 2023
    Configuration menu
    Copy the full SHA
    f88fb36 View commit details
    Browse the repository at this point in the history

Commits on Jun 9, 2023

  1. few updates, now giving stars the right number of shells

    @rieder
    rieder committed Jun 9, 2023
    Configuration menu
    Copy the full SHA
    1b784ff View commit details
    Browse the repository at this point in the history

  2. Updates to (mostly) units used

    @rieder
    rieder committed Jun 9, 2023
    Configuration menu
    Copy the full SHA
    4bf4da1 View commit details
    Browse the repository at this point in the history

Commits on Jun 12, 2023

  1. Updates: add setters, rename parameters/methods

    @rieder
    rieder committed Jun 12, 2023
    Configuration menu
    Copy the full SHA
    ff92106 View commit details
    Browse the repository at this point in the history

Commits on Jun 14, 2023

  1. Updates

    @rieder
    rieder committed Jun 14, 2023
    Configuration menu
    Copy the full SHA
    71bb237 View commit details
    Browse the repository at this point in the history

Commits on Jun 19, 2023

  1. fix for changing initial parameters of the star

    @rieder
    rieder committed Jun 19, 2023
    Configuration menu
    Copy the full SHA
    1746fe9 View commit details
    Browse the repository at this point in the history

  2. more updates!

    @rieder
    rieder committed Jun 19, 2023
    Configuration menu
    Copy the full SHA
    8351231 View commit details
    Browse the repository at this point in the history

  3. fixes for state model

    @rieder
    rieder committed Jun 19, 2023
    Configuration menu
    Copy the full SHA
    77881a3 View commit details
    Browse the repository at this point in the history

  4. updates for clarity

    @rieder
    rieder committed Jun 19, 2023
    Configuration menu
    Copy the full SHA
    8f42344 View commit details
    Browse the repository at this point in the history

Commits on Jun 27, 2023

  1. updates

    @rieder
    rieder committed Jun 27, 2023
    Configuration menu
    Copy the full SHA
    ea50c34 View commit details
    Browse the repository at this point in the history

Commits on Sep 19, 2023

  1. small updates

    @rieder
    rieder committed Sep 19, 2023
    Configuration menu
    Copy the full SHA
    596ea32 View commit details
    Browse the repository at this point in the history

Commits on Sep 22, 2023

  1. Merge branch 'add_genec' of github.com:rieder/amuse into add_genec

    @rieder
    rieder committed Sep 22, 2023
    Configuration menu
    Copy the full SHA
    2939cea View commit details
    Browse the repository at this point in the history

Commits on Sep 25, 2023

  1. Merge branch 'amusecode:main' into add_genec

    @rieder
    rieder authored Sep 25, 2023
    Configuration menu
    Copy the full SHA
    210fdad View commit details
    Browse the repository at this point in the history

  2. Merge branch 'add_genec' of github.com:rieder/amuse into add_genec

    @rieder
    rieder committed Sep 25, 2023
    Configuration menu
    Copy the full SHA
    759541b View commit details
    Browse the repository at this point in the history

  3. fix typo

    @rieder
    rieder committed Sep 25, 2023
    Configuration menu
    Copy the full SHA
    5142a77 View commit details
    Browse the repository at this point in the history

Commits on Dec 14, 2023

  1. Merge branch 'amusecode:main' into add_genec

    @rieder
    rieder authored Dec 14, 2023
    Configuration menu
    Copy the full SHA
    43e02a7 View commit details
    Browse the repository at this point in the history

Commits on Feb 13, 2024

  1. Merge branch 'main' into add_genec

    @rieder
    rieder authored Feb 13, 2024
    Configuration menu
    Copy the full SHA
    eb6082e View commit details
    Browse the repository at this point in the history