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Remove scikit image #2011

Merged
merged 4 commits into from
Oct 23, 2024
Merged

Remove scikit image #2011

merged 4 commits into from
Oct 23, 2024

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ternaus
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@ternaus ternaus commented Oct 23, 2024

Fixes: #1895

Summary by Sourcery

Remove the dependency on scikit-image by refactoring the superpixels function to use numpy operations instead of regionprops, and update the setup.py to reflect this change.

Enhancements:

  • Refactor the superpixels function to remove the dependency on scikit-image by replacing regionprops with numpy operations.

Build:

  • Remove scikit-image from the list of installation requirements in setup.py.

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sourcery-ai bot commented Oct 23, 2024

Reviewer's Guide by Sourcery

This pull request removes the dependency on scikit-image and modifies the superpixels function to use numpy operations instead. The changes aim to optimize the implementation and reduce external dependencies.

Entity relationship diagram for setup.py dependencies

erDiagram
    INSTALL_REQUIRES {
        string numpy
        string scipy
        string PyYAML
        string typing-extensions
        string pydantic
    }
    note for INSTALL_REQUIRES "Removed scikit-image dependency"
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Class diagram for the updated superpixels function

classDiagram
    class SuperpixelsFunction {
        - skimage.measure.regionprops(segments + 1, intensity_image=image[..., c])
        + np.unique(segments)
        + np.mean(image_sp_c[mask])
    }
    note for SuperpixelsFunction "Replaced scikit-image operations with numpy operations"
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File-Level Changes

Change Details Files
Refactor superpixels function to remove scikit-image dependency
  • Replace skimage.measure.regionprops with custom numpy operations
  • Implement mean intensity calculation using numpy
  • Modify the loop to iterate over unique segment labels
  • Update the logic for replacing pixel values in segments
albumentations/augmentations/functional.py
Remove scikit-image from project dependencies
  • Remove 'scikit-image>=0.21.0' from INSTALL_REQUIRES list
  • Reformat the INSTALL_REQUIRES list for better readability
setup.py

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Hey @ternaus - I've reviewed your changes - here's some feedback:

Overall Comments:

  • Great initiative in removing the scikit-image dependency. To ensure the change doesn't introduce any regressions, please provide information on the testing performed, especially comparing the output of the new implementation with the old one across various input types and edge cases.
  • Consider adding performance benchmarks comparing the new implementation to the old one. This information would be valuable for users and could highlight the benefits of this change.
  • Some comments in the superpixels function (e.g., about 'segments+1') are no longer relevant to the new implementation. Consider updating or removing these to reflect the current approach.
Here's what I looked at during the review
  • 🟡 General issues: 1 issue found
  • 🟢 Security: all looks good
  • 🟢 Testing: all looks good
  • 🟢 Complexity: all looks good
  • 🟢 Documentation: all looks good

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Help me be more useful! Please click 👍 or 👎 on each comment and I'll use the feedback to improve your reviews.

albumentations/augmentations/functional.py Show resolved Hide resolved
@ternaus ternaus merged commit 8867a2b into main Oct 23, 2024
14 checks passed
@ternaus ternaus deleted the remove_scikit-image branch October 23, 2024 03:00
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[Tech debt] Remove dependency on scikit-image
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