ABIMS - ROSCOFF - 01/08/14 - E. Prudent

---

Privatize BLAST tools on Galaxy

I. File list

MakeToolsBlast.py Module to automate the creation of privatized BLAST tools blast_filter.py File to restricit access to BLAST tools blast_rules.py File to restricit execution to BLAST tools VisuBlast.xml Wrapper xml to Visualize BLAST Tools VisuBlast.py Wrapper python to Visualize BLAST Tools XmlCreate.py Template XML to create BLAST tools Pictures/ Directory of pictures for VisuBlast

II. To do

Place the FOLDER containing all this file in galaxy-dist. Execute install.sh

./install.sh

III. Install overview

|-----------------|
|   galaxy-dist   |--------> MakeToolsBlast.py
|-----------------|--------> XmlCreate.py	
	|
	|-----------|
	|   tools   |
	|-----------|
	|	|		
	|	|-----------|
	|	|   blast   |--------> VisuBlast.xml
	|	|-----------|--------> VisuBlast.py
	|		
	|---------------|
	|   tool-data   |
	|---------------|
	|	|		
	|	|----------------|
	|	|   BlastAbims   |--------> Pictures/
	|	|----------------|		
	|
	|---------|
	|   lib   |
	|---------|
		|		
		|------------|
		|   galaxy   |
		|------------|
			|		
			|----------|
			|   jobs   |
			|----------|
			|	|		
			|	|-----------|
			|	|   rules   |--------> blast_rules.py
			|	|-----------|
			|
			|-----------|
			|   tools   |
			|-----------|
				|		
				|-------------|
				|   filters   |--------> blast_filters.py
				|-------------|

Historic contributors

• Emma Prudent - ABiMS / IFB - UPMC/CNRS - Station Biologique de Roscoff - France
• Erwan Corre - ABiMS / IFB - UPMC/CNRS - Station Biologique de Roscoff - France
• Christophe Caron - ABiMS / IFB - UPMC/CNRS - Station Biologique de Roscoff - France