Setup project configuration files.

.gitignore

@@ -1,8 +1,136 @@
-__pycache__
-venv
-*.weights.h5
-plot*.png
-runs
-*.dat
-*.csv
-*.pth
+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+pip-wheel-metadata/
+share/python-wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.nox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+*.py,cover
+.hypothesis/
+.pytest_cache/
+
+# Translations
+*.mo
+*.pot
+
+# Django
+*.log
+local_settings.py
+db.sqlite3
+db.sqlite3-journal
+
+# Flask
+instance/
+.webassets-cache
+
+# Scrapy
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# IPython
+profile_default/
+ipython_config.py
+
+# pyenv
+.python-version
+
+# PEP 582; used by e.g. github.com/David-OConnor/pyflow
+__pypackages__/
+
+# Celery stuff
+celerybeat-schedule
+celerybeat.pid
+
+# SageMath
+*.sage.py
+
+# Environments
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+.dmypy.json
+dmypy.json
+
+# Pyre type checker
+.pyre/
+
+# VisualStudioCode
+.vscode/*
+!.vscode/settings.json
+!.vscode/tasks.json
+!.vscode/launch.json
+!.vscode/extensions.json
+*.code-workspace
+**/.vscode
+
+# JetBrains
+.idea/
+
+# MacOS
+.DS_Store

.pre-commit-config.yaml

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+exclude: "^docs/conf.py"
+
+repos:
+  - repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: v4.0.1
+    hooks:
+      - id: trailing-whitespace
+      - id: check-added-large-files
+      - id: check-ast
+      - id: check-json
+      - id: check-merge-conflict
+      - id: check-xml
+      - id: check-yaml
+      - id: debug-statements
+      - id: end-of-file-fixer
+      - id: requirements-txt-fixer
+      - id: mixed-line-ending
+        args: ["--fix=lf"]
+      - id: detect-private-key
+
+  # If you want to avoid flake8 errors due to unused vars or imports:
+  - repo: https://github.com/myint/autoflake.git
+    rev: v1.4
+    hooks:
+      - id: autoflake
+        args:
+          [--in-place, --remove-all-unused-imports, --remove-unused-variables]
+
+  - repo: https://github.com/psf/black
+    rev: 23.3.0
+    hooks:
+      - id: black
+        language_version: python3
+
+  - repo: https://github.com/PyCQA/flake8
+    rev: 4.0.1
+    hooks:
+      - id: flake8
+        additional_dependencies: [flake8-bugbear]
+        args: ["--max-line-length=120"]
+
+  # Jupyter notebook cell output clearing
+  - repo: https://github.com/kynan/nbstripout
+    rev: 0.5.0
+    hooks:
+      - id: nbstripout
+
+  # Formatting yaml
+  - repo: https://github.com/pre-commit/mirrors-prettier
+    rev: v2.5.1
+    hooks:
+      - id: prettier
+        types: [yaml]

.readthedocs.yml

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+# Read the Docs configuration file
+# See https://docs.readthedocs.io/en/stable/config-file/v2.html for details
+
+# Required
+version: 2
+
+build:
+  os: ubuntu-20.04
+  tools:
+    python: "3.9"
+
+# Build documentation in the docs/ directory with Sphinx
+sphinx:
+  configuration: docs/source/conf.py
+
+# Build documentation with MkDocs
+mkdocs:
+  configuration: mkdocs.yml
+
+# Optionally build your docs in additional formats such as PDF
+formats:
+  - pdf
+
+python:
+  install:
+    - requirements: docs/requirements.txt

CHANGELOG.md

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+# CHANGELOG
+
+## Unreleased
+
+- Set up minimal project structure.

README.md

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+<div align="center">
+
+# Continuity
+
+<a href="https://pytorch.org/get-started/locally/">
+    <img alt="PyTorch" src="https://img.shields.io/badge/PyTorch-ee4c2c?logo=pytorch&logoColor=white">
+</a>
+
+</div>
+
+# Description
+Continuity provides a python package for mapping continuous functions with
+neural networks.
+
+# Quickstart
+
+## Install the Continuity package
+Before using this module, you need to install the project as a package.
+Create a virtual environment (use Python 3.9 on MacOS), activate the environment
+and install the project as a package.
+```
+python -m venv venv
+source venv/bin/activate
+pip install -e .
+```
+
+## Examples
+Up to now, some examples can be found in the `tests` directory.
+
+# Contributing
+If you find a bug or have a feature request, please open an issue on GitHub. If
+you want to contribute code, please fork the repository and submit a pull
+request.
+
+# License
+This project is licensed under the GNU GPLv3 License - see the
+[LICENSE](LICENSE) file for details.

pyproject.toml

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+
+[build-system]
+# AVOID CHANGING REQUIRES: IT WILL BE UPDATED BY PYSCAFFOLD!
+requires = ["setuptools>=46.1.0", "setuptools_scm[toml]>=5", "wheel"]
+build-backend = "setuptools.build_meta"
+
+[tool.setuptools_scm]
+# See configuration details in https://github.com/pypa/setuptools_scm
+version_scheme = "no-guess-dev"