Add runSCENIC function to sclet #6
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不能只有代码，给一个可以写到文档里的，可以运行重复出来的例子。 |
R/runSCENIC.R
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| minCountsPerGene = 3, | ||
| minSamples = 0.01){ | ||
| dir.create("int") | ||
| # 设置物种和TF数据库路径 |
SCENIC.Rmd
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| library(sclet) | ||
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| # use demo data from SCENIC, mousebrain_sce | ||
| sce <- readRDS("data/mousebrain_SCENIC_sce.Rds") |
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我说要一个可以重复的例子，你觉得这个可以重复？数据只在你的电脑里。
SCENIC.Rmd
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| # use demo data from SCENIC, mousebrain_sce | ||
| sce <- readRDS("data/mousebrain_SCENIC_sce.Rds") | ||
| scenicOptions <- runSCENIC(sce, mouse, 10, | ||
| ``` |
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示例和代码是分开的，示例放的是这个分支，https://github.com/YuLab-SMU/sclet/tree/gh-pages.
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写示例，不是写一个简单的代码，你看，能跑通。例子需要解说。对于输入、输出、结果解说，尽可能详细地把事情说清楚。
| ## code to prepare `DATASET` dataset goes here | ||
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| load("./inst/ext/defaultDbNames.RData") | ||
| usethis::use_data(defaultDbNames, overwrite = TRUE) |
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这个数据集并不需要。你的代码里并没有访问到这个数据，而是使用SCENIC::defaultDbNames访问的。
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